RNA id: CI01000059_06170785_06173405.mRNA


Basic Information

Item Value
RNA id CI01000059_06170785_06173405.mRNA
length 586
RNA type mRNA
GC content 0.46
exon number 3
gene id CI01000059_06170785_06173405
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 6170785 ~ 6173539 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTCGTGCAGCGCTAATGGGTTACTATATATTTGAGTCTATTTCACGCTCTCAAAACTTGAGTAGACATTCAGTGACATACTAAATAGACAATGTTTTCAAATATAGCTTGTCTTAGTTTTTTAAATGTACGAATGCCGGCCCTTTTGGCCAAACGAACATGGAATTCAACGAAATACGTTAAAATATCGCCTCAGGGGAAAAAGCAAAAGTTGGAGAGCGACGCCGTTACATTCTCACCATCACTGAGTCCTGAGCAACTTGAACGGATCTCCAGAAACAAAAAGGCGGCTCTGGAACGGCTCGCTGCACACCAAGCTGCTCCGGACGGGATCGGAGAGAGCTGGAAGAAAGCGCTCACCGCAGAATTCGGAAAGAACTACTTTAAGTCATTGATGTCTTTTGTCGCTGAGGAGAGGAAAAAACACACCATCTATCCACCTTCACATGAAGTCTTCACCTGGACACGAACTTGTGACATACAAGATGTAAAGGTTGTGATACTTGGCCAGGACCCGTATCATGGGCCAAACCAGGCTCATGGGCTTTGCTTCAGTGTTCAGAGACCTGTGCCACCTCCACCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289485 lncRNA downstream 212540 5958025 ~ 5958245 (-) True G255067
TU289417 lncRNA downstream 281961 5888507 ~ 5888824 (-) True G255018
TU289415 lncRNA downstream 291841 5878513 ~ 5878944 (-) True G255016
TU289347 lncRNA downstream 326214 5827149 ~ 5844571 (-) True G254954
TU289398 lncRNA downstream 420524 5750010 ~ 5750261 (-) True G255003
TU289499 lncRNA upstream 8603 6182142 ~ 6182347 (-) True G255081
TU289504 lncRNA upstream 18290 6191829 ~ 6222256 (-) False G255085
TU289505 lncRNA upstream 18290 6191829 ~ 6225255 (-) True G255085
TU289506 lncRNA upstream 51796 6225335 ~ 6225628 (-) True G255086
TU289520 lncRNA upstream 190184 6363723 ~ 6363948 (-) True G255099
CI01000059_06163468_06163941.mRNA mRNA downstream 6844 6163329 ~ 6163941 (-) True CI01000059_06163468_06163941
CI01000059_06136533_06161227.mRNA mRNA downstream 9558 6136224 ~ 6161227 (-) True CI01000059_06136533_06161227
CI01000059_06064465_06072815.mRNA mRNA downstream 97970 6064074 ~ 6072815 (-) True CI01000059_06064465_06072815
CI01000059_06049066_06057648.mRNA mRNA downstream 113073 6049025 ~ 6057712 (-) True CI01000059_06049066_06057648
CI01000059_05994517_06034201.mRNA mRNA downstream 136584 5994517 ~ 6034201 (-) True CI01000059_05994517_06034201
CI01000059_06248905_06250044.mRNA mRNA upstream 75366 6248905 ~ 6250422 (-) True CI01000059_06248905_06250044
CI01000059_06266617_06275670.mRNA mRNA upstream 93078 6266617 ~ 6275670 (-) True CI01000059_06266617_06275670
CI01000059_06294175_06303446.mRNA mRNA upstream 120442 6293981 ~ 6303446 (-) True CI01000059_06294175_06303446
CI01000059_06368210_06388793.mRNA mRNA upstream 193678 6367217 ~ 6389203 (-) True CI01000059_06368210_06388793
CI01000059_06413479_06420106.mRNA mRNA upstream 239940 6413479 ~ 6420106 (-) True CI01000059_06413479_06420106
TU288508 other downstream 932486 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 1416703 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 2698876 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 4071118 2099629 ~ 2099667 (-) True G252257
TU285506 other downstream 4915123 1255599 ~ 1255662 (-) True G251512
TU289512 other upstream 62567 6236106 ~ 6242792 (-) True G255092
TU291574 other upstream 2808157 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 2808157 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 3280677 9454216 ~ 9599008 (-) True G257014

Expression Profile