RNA id: CI01000059_06446066_06457895.mRNA



Basic Information


Item Value
RNA id CI01000059_06446066_06457895.mRNA
length 1459
RNA type mRNA
GC content 0.39
exon number 7
gene id CI01000059_06446066_06457895
representative True

Chromosome Information


Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 6445276 ~ 6457919 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTCTCGCGCTATACAGGATTAACATGGCGTCGTGCGCTGTGCAGCTGATTGATAAAGTGACGAGGAGGAAAGTGGAGAAAAAGAAATTTGAAACAAACATTTTGAAGGACCCTTACATGAAGCACCCTTTACAAAACAGATGGGGTCTTTGGTTCTACAAGCACGATAAGAGCAAAATGTGGCAAGACAATCTAAGGCTCATCACCAAGTTCGACACAGTTGAGGACTTCTGGGCATTATACAACAACATACAGCTGCCAAGCAAACTGTCCTCTGGCTGTGACTATTCTATGTTCAAGGATGGCATAGAGCCCATGTGGGAAGACAGGAGTAATAAATGTGGTGGCCGCTGGTTGATTACTCTAGCCAAGCAGCATAGACACACTGAACTTGACCGGTTCTGGCTGGAAACGATGTTGTGTCTTATTGGAGAGGGCTTTGGCTCCTTCAGTCGGGATATCTGTGGAAGTGTAATCAATATCCGTGCCAAAGGGGACAAAATTGCCATCTGGACCTCCAATGCTGAGAACTGTGAGACCGTTACATATATTGGTCAAAAGTATAAAGAAAGTCTTGGACTCCCACAGAAACTTGTCATTGGATATCAAGCCCATGCAGACACTGCAACTAAGAGCAACTCCATAACCAAAAACAAGTTTGTTGTTTAAAAGTGGGATTTAGTTTGATACTGTTGTAGGGGCCTAGATGTTTATACTGGTAAACAATTAGTATTCTTGTATTCAGATTTTTTTGTTTTTTTTTTGTTACTTTGACGTGTGGCTGTAACTTGTGGCATTTAAATTCACCTTGATAAAATATGCAAGACTTTGTAAATGTTGTTTGAGTTGTACTTTTTTGTGGTGTTGAAGAGGTGTCTAAAATGCTAAGACCTTTTTTCTTTGAAAATTAAAACTTGATCTGCTTTTGCAAATGCTTCTATGGCTGTATACATGTGTGAAAAGAACATGCTTTGGCTTTCCTTTAAGTTAAACAGGTCTTTAAAAAATGTGCTGCACTTAGCGGATGGATGGATGGAATATTGTGTGCTTTATTGGAAACAAGGAACAACCCTTTGGTATTATGGAGATTACATGGTCAATGTCACACAGTTGCTTATTTGATTAGTTACCTAGTGTGCAGAATCTTATCGATCTTATCAAGTTTCTGTCCAGAACATTTCTTTGTTTAAAAGAATTTTAAAGTATTGAAACCGACCATGTTGAGTAAAGTAGTAGTATTTTGATTAAAACACATTTCTCAGTATTTACAACAGGACAACTGTACTGGTGAAATGGCTTTAGTCACTCATGATTGGTGATTAATCCTGCTTTCGCTACACCACCTTGGAAAAAGAAACCATGAATGTGTCAACGAACCTGGGTTGGTACAGAAAGGCATGGTTCAGCAACAGTAACCATTTGTTGAATTAAATGAATTATGTTAAATCCTCAAAATAAA

Function


GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU289529 lncRNA downstream 37286 6407749 ~ 6407990 (-) True G255108
TU289527 lncRNA downstream 41313 6403735 ~ 6403963 (-) True G255106
TU289524 lncRNA downstream 44662 6399892 ~ 6400614 (-) True G255103
TU289521 lncRNA downstream 81064 6363998 ~ 6364212 (-) True G255100
TU289520 lncRNA downstream 81328 6363723 ~ 6363948 (-) True G255099
TU289541 lncRNA upstream 9265 6467184 ~ 6467444 (-) True G255117
TU289542 lncRNA upstream 12741 6470660 ~ 6470873 (-) True G255118
TU289558 lncRNA upstream 77299 6535218 ~ 6535596 (-) True G255134
TU289598 lncRNA upstream 111952 6569871 ~ 6570111 (-) True G255168
TU289602 lncRNA upstream 116512 6574431 ~ 6574642 (-) True G255172
CI01000059_06430220_06439547.mRNA mRNA downstream 5729 6429884 ~ 6439547 (-) True CI01000059_06430220_06439547
CI01000059_06413479_06420106.mRNA mRNA downstream 25170 6413479 ~ 6420106 (-) True CI01000059_06413479_06420106
CI01000059_06368210_06388793.mRNA mRNA downstream 56073 6367217 ~ 6389203 (-) True CI01000059_06368210_06388793
CI01000059_06294175_06303446.mRNA mRNA downstream 141830 6293981 ~ 6303446 (-) True CI01000059_06294175_06303446
CI01000059_06266617_06275670.mRNA mRNA downstream 169606 6266617 ~ 6275670 (-) True CI01000059_06266617_06275670
CI01000059_06521399_06533677.mRNA mRNA upstream 63240 6521159 ~ 6534556 (-) True CI01000059_06521399_06533677
CI01000059_06537186_06537567.mRNA mRNA upstream 79185 6537104 ~ 6539310 (-) True CI01000059_06537186_06537567
CI01000059_06546191_06552012.mRNA mRNA upstream 88133 6546052 ~ 6552012 (-) True CI01000059_06546191_06552012
CI01000059_06560307_06561286.mRNA mRNA upstream 101865 6559784 ~ 6561450 (-) True CI01000059_06560307_06561286
CI01000059_06606518_06612481.mRNA mRNA upstream 148572 6606491 ~ 6612481 (-) True CI01000059_06606518_06612481
TU289512 other downstream 202484 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 1206977 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 1691194 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 2973367 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 4345609 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 2523777 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 2523777 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 2996297 9454216 ~ 9599008 (-) True G257014

Expression Profile