RNA id: CI01000059_06537186_06537567.mRNA


Basic Information

Item Value
RNA id CI01000059_06537186_06537567.mRNA
length 2095
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000059_06537186_06537567
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 6537104 ~ 6539310 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGGGATGTCTATACTGTAGCTTGGTTATGAGGATGAGTGTCTCTCAGCAGTGAGGTCCATGCCAGCCGGGACTTGAAAGCCTTAGTGATCTGAAACAAAACAAGACGACAACCAGAAGGTGCACAGTAATATGCTCATGCTTATAATGGGGAGGGAGGGAGGGTTGCGAGCAGTTTGAGCATACTTACCGAGCAGTAATGCCACGTATATATATGTCCCGTGTCTAATAGGAGAATGGTAGTGATTGGAGCAGTTTGACAGCTGACCGCATCAGCTGGTCGCAGCACTATGCCTACGTGGCCTGACTGAACTAACGCTGCGCTCGATTAGTATACAACTCAGAGTAGTGTTGAGTTAATTTATTATTTTAGACAAAATTAGCGTAACACTTTACAATAAGGTTTCATTTGTTAACATTATTTAACTACAGTAGTGGCCAAAAGTGATGTCTGGAGGGGATATTTGTTTTTAATGATGCTACAAGTTCGATTAAACCATCAAAATATGAGGTAAATATATATATACATATATATATATTTTTAAAATATTTTAAATATGAGGGAAGAACATAACACTAAACTTGGTTAAGGTACTAAACTATTTGGCAAAAAAAGGCAAACTACAGCTACAGGTTTAATTTTTCTATGAAAAAAAATGCATAGAAAAACAAAAAGCTCACAGGAAAAAAGCATACATTGACTACATAATCAGTTACTAATATTTCGTTGGTTCTCTCTTGTTTGTATGACCACCTGGACAAAAATGATTTCCACACAATTTGGCATGTTTCGTTGCATTATTATCACAAATAAAATAATTGACTCCAAGCACAACTACGAAATAGTACATTATATTTATAATATTTGAAAAAAGGGTGAAGATGTCAATTTTCCTATAGGCCGGACATCACTTTTGGCCACTACTGTACATCAGGTAACCATGAACTAACAATGAAAAATACTACATTATTAAAATCAAAAGTTGCATCTGTTAATATTATTTAATGGTATTGACTGAGCTAACATGGACAGTTGCATTTATTAACAAATGGTAACAAATATTAAATACTGTAACAAATGTAATACTCTTAATTAATGCATTAACCAACCTTAACTAATGAAACCTTATTGTAAAGTGTTACCAAATTAGTGTCACGAATGTGGCTCCCTCGGCCCTTCCTCCGGACCGCCGGAGGGAGCCATCACCAGAATACTGATCAGTTCTCATTCGGACTACGTCTCCCATGGGCCCTCATTCCTGGGACTGATTGCACACTCACCTGCACCACATCACACTCACACTATTTAAGACACACTCACACACACACACCGCGAAGTCTTGATTTGCCTTGGTGATCATTTCTGAGCGTTTTCCCGTGGACTGTTACCTGTTATCGTTTGGACTGTTTATTCTCTGTGACCCTTTGCTGCCTGCCCTGATCTTTGCCTGTTTCCTGGACTGTGATTGTTTGCTGCCTGCCCTGATCCTTGCCTGTACACTGACTCTGTTTGTCTGCCACCTGCCTTGACCATTGCCTGTCCCAGTTTATGCCTCTGCCTTTGCCCTGTCTGCTCTGTAAGTTCTCTTAATAAACAGCTGCAAATGGATCCACATTTTGTCGACTCATCATTACAATTAGGCTCTTTTTTTTTATTTATTTTTTTTTATTCAGAGTAGATATATTTATCACCATATTTTTTTATTTAGAGAGCACAGAGACATTTTCCCTGCTTGTGCACAGATGAGAAGCATGAAGCAGATAGTGATTCTGATGACTCTCATAAGTGGTGTGTTCACCGCTCCATTTGTGAAGGGGGAGCAGGCCACGAAATTTTTACGTATAAAGAGACAGTCTGGCTACTGGGATCCCAATTATTCTCAGAACCAATGGGGTTACACCATACAAGAGCAGGTGAACACTAGCGACCTATCCACAGCCTCAGATTTGATACGTTGTGTGAAAAAGGCTTCCACTGTTCAGCTGATTATAATGTTTGTATGTACAGTATAAGTGAAATCGAACCAAAGTACATCTATCACTTGCTTCGTATGTGGAACCTCTAAAAGCTACAGCACTATTTACATCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289558 lncRNA downstream 1508 6535218 ~ 6535596 (-) True G255134
TU289542 lncRNA downstream 66231 6470660 ~ 6470873 (-) True G255118
TU289541 lncRNA downstream 69660 6467184 ~ 6467444 (-) True G255117
TU289529 lncRNA downstream 129114 6407749 ~ 6407990 (-) True G255108
TU289527 lncRNA downstream 133141 6403735 ~ 6403963 (-) True G255106
TU289598 lncRNA upstream 30561 6569871 ~ 6570111 (-) True G255168
TU289602 lncRNA upstream 35121 6574431 ~ 6574642 (-) True G255172
TU289606 lncRNA upstream 39780 6579090 ~ 6579547 (-) True G255176
TU289634 lncRNA upstream 146585 6685895 ~ 6686151 (-) True G255203
TU289636 lncRNA upstream 150401 6689711 ~ 6689945 (-) True G255205
CI01000059_06521399_06533677.mRNA mRNA downstream 2548 6521159 ~ 6534556 (-) True CI01000059_06521399_06533677
CI01000059_06446066_06457895.mRNA mRNA downstream 79185 6445276 ~ 6457919 (-) True CI01000059_06446066_06457895
CI01000059_06430220_06439547.mRNA mRNA downstream 97557 6429884 ~ 6439547 (-) True CI01000059_06430220_06439547
CI01000059_06413479_06420106.mRNA mRNA downstream 116998 6413479 ~ 6420106 (-) True CI01000059_06413479_06420106
CI01000059_06368210_06388793.mRNA mRNA downstream 147901 6367217 ~ 6389203 (-) True CI01000059_06368210_06388793
CI01000059_06546191_06552012.mRNA mRNA upstream 6742 6546052 ~ 6552012 (-) True CI01000059_06546191_06552012
CI01000059_06560307_06561286.mRNA mRNA upstream 20474 6559784 ~ 6561450 (-) True CI01000059_06560307_06561286
CI01000059_06606518_06612481.mRNA mRNA upstream 67181 6606491 ~ 6612481 (-) True CI01000059_06606518_06612481
CI01000059_06621058_06632392.mRNA mRNA upstream 80588 6619898 ~ 6632909 (-) True CI01000059_06621058_06632392
CI01000059_06642665_06650346.mRNA mRNA upstream 102999 6642309 ~ 6650998 (-) True CI01000059_06642665_06650346
TU289512 other downstream 294312 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 1298805 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 1783022 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 3065195 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 4437437 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 2442386 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 2442386 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 2914906 9454216 ~ 9599008 (-) True G257014

Expression Profile