Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016948 |
| length | 832 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 7 |
| gene id | XLOC_008464 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 21252532 ~ 21262567 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1072 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Human ortholog(s) of this gene implicated in cardiovascular system disease and type 2 diabetes mellitus. Orthologous to human USF1 (upstream transcription factor 1). |
| ensembl_id | ENSDART00000142902 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018928 | lncRNA | upstream | 3243 | 21247526 ~ 21251557 (+) | False | XLOC_008462 |
| TCONS_00018929 | lncRNA | upstream | 3243 | 21249466 ~ 21251557 (+) | True | XLOC_008462 |
| TCONS_00018773 | lncRNA | upstream | 8966 | 21240424 ~ 21245834 (+) | True | XLOC_008461 |
| TCONS_00018772 | lncRNA | upstream | 90227 | 21164035 ~ 21164573 (+) | True | XLOC_008457 |
| TCONS_00018927 | lncRNA | upstream | 217022 | 21017649 ~ 21037778 (+) | True | XLOC_008456 |
| TCONS_00016950 | lncRNA | downstream | 8303 | 21269223 ~ 21272557 (+) | True | XLOC_008465 |
| TCONS_00018930 | lncRNA | downstream | 62126 | 21323046 ~ 21427967 (+) | False | XLOC_008467 |
| TCONS_00018931 | lncRNA | downstream | 62136 | 21323056 ~ 21495896 (+) | False | XLOC_008467 |
| TCONS_00018932 | lncRNA | downstream | 62141 | 21323061 ~ 21390208 (+) | False | XLOC_008467 |
| TCONS_00018933 | lncRNA | downstream | 62157 | 21323077 ~ 21390208 (+) | False | XLOC_008467 |
| TCONS_00016936 | mRNA | upstream | 50329 | 21202820 ~ 21204471 (+) | True | XLOC_008460 |
| TCONS_00016930 | mRNA | upstream | 360024 | 20843161 ~ 20894776 (+) | False | XLOC_008453 |
| TCONS_00016929 | mRNA | upstream | 445676 | 20801253 ~ 20809124 (+) | True | XLOC_008452 |
| TCONS_00016928 | mRNA | upstream | 448605 | 20799943 ~ 20806195 (+) | False | XLOC_008452 |
| TCONS_00016924 | mRNA | upstream | 611253 | 20548212 ~ 20643547 (+) | True | XLOC_008451 |
| TCONS_00016949 | mRNA | downstream | 1997 | 21262917 ~ 21275683 (+) | False | XLOC_008465 |
| TCONS_00016951 | mRNA | downstream | 15815 | 21276735 ~ 21320638 (+) | True | XLOC_008466 |
| TCONS_00016956 | mRNA | downstream | 411361 | 21672281 ~ 21673630 (+) | False | XLOC_008471 |
| TCONS_00016957 | mRNA | downstream | 411780 | 21672700 ~ 21673452 (+) | True | XLOC_008471 |
| TCONS_00016959 | mRNA | downstream | 446980 | 21707900 ~ 21715436 (+) | False | XLOC_008472 |
| TCONS_00016937 | other | upstream | 2518 | 21252191 ~ 21252282 (+) | True | XLOC_008463 |
| TCONS_00016935 | other | upstream | 56514 | 21180094 ~ 21198286 (+) | True | XLOC_008459 |
| TCONS_00016934 | other | upstream | 77751 | 21167142 ~ 21177049 (+) | True | XLOC_008458 |
| TCONS_00016921 | other | upstream | 719316 | 20529280 ~ 20535484 (+) | False | XLOC_008450 |
| TCONS_00016911 | other | upstream | 892828 | 20355795 ~ 20361972 (+) | True | XLOC_008446 |
| TCONS_00016953 | other | downstream | 176713 | 21437633 ~ 21437728 (+) | True | XLOC_008468 |
| TCONS_00016954 | other | downstream | 176956 | 21437876 ~ 21437959 (+) | True | XLOC_008469 |
| TCONS_00016955 | other | downstream | 186736 | 21447656 ~ 21447800 (+) | True | XLOC_008467 |
| TCONS_00016960 | other | downstream | 450740 | 21711660 ~ 21715665 (+) | False | XLOC_008472 |
| TCONS_00016964 | other | downstream | 506604 | 21767524 ~ 21770009 (+) | True | XLOC_008473 |
