RNA id: CI01000059_07735781_07738322.mRNA



Basic Information


Item Value
RNA id CI01000059_07735781_07738322.mRNA
length 1554
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000059_07735781_07738322
representative True

Chromosome Information


Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 7735364 ~ 7739192 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTATGGTTTGCCAGGTCTCTCAGCTTCACTTTAAAACAGTTCAGCTATTATTGATTGTGCTGGTGTTGTAGCTTTTAAGATATAATAGTTACAATCATAAGTAATATTTACATAATATCTGCCGTGTGTCAGCGGCCGCCATTCTCCATTTGGAAACAAATGACCTTTCCAAATGAGAAAATTTGACTATTTTGAAATTTTCAGGCACAAATGACCTTATTGTCTGAGAATGAATGCGTACAATGCTAAAAAGGACAGATCATAACCGTCTGTCTGCAGTCACATCAGTGCAGCAGATCAAGATGTGTAGCATTTAACACCACACACACACACACACACAATACACACTTGTCGACATTCAGCTTGCTTCCCTTCTGGGGATCAAGAATGCAGCCTCTCATTGTCCCGGCGAAGCGTCTCTTCAGGCCGTGTTGTGAGTGGAGGTGATGTGGCCCAGTGCTGAGGCCAAACTCAGGTCATTGGCCGAGACGCCCCGGGCCACACAGACCTTCACCGCCTCAGAGACACAAACCAACACAAATAAGTATCTGCTAATAGAGGGACAGGATCAGCGTTTGCTCAAGATCCCTGAGTGTGTGGAACAGAACGAGAGAAAGAAACACTCACGGATATAAATATGCATTTAAACCAATGAATCCTCATCTAAACTGGAAACTTCTGATCAACAAAACTAAAGTAAGAGGAGACGCAGGGATGGATAGAAATGCTACTTGTGAAAAAAATGGTATTTGCATTTACTGTCTCTTGCATCTCTCCATCTGGGTAAGCGACCTCCAACAAACAACACAAGATGAACACTGGGGAGCGATGAGGAACGCTGCAGGTGGAAACACGAGAATGCTGGGCAGATGGAGAATGAGCGTGGAGAAACTAGACTCGAAAGAGCCGGAGTTAAGGCATCATCCGCAGCGTCTGAGCGCGAGCAACGACACAAAGAGGAATTCAGAGGGATGATGTCAGGAATTTTTGTGACAGACCATGCGAGAACGAGAGAGATGGAGATCTTTATCAAGCCGACACATCCTGAGCATCCAGAGCCTGGAGGCACAATCCATCAAACACATCCTCAGCATCTGCGCTTAATGACGGGTTCTTGTTTAAATGAAAGGATATGAGAAATTCACAAACACTCAATACACAAGAGCCATTCAGCAGTGGCTCTATCAGAGGTCTCTTTATCACCATGATTTCAAACAGAGGAAATGTGGCTGGAACAAGTGTATTCTGAGCGACAGCACTGAACATACACCGTACCCTTCTTCACACTGTTTACTATTGTTGTGTTGATGACACATTAAGCTGACCCCTCAAAAACTCTTATTGACATGTGATGGTTATGAATGAGGTAAAAACTATTGTCCTTCATTTAAACATCTTGAGCAACATCTCCCTCTTGTGGACAGTATGAAGAGGGTCAATTAATAAGAGGTTTGTGCAAAAATTCTTTATATTTAAAAAGACTACTGTTGTTGCTTTTTCTTTTTTTTTTTTTTTTTTACCTTGGACAGGACAGACTTTAAAAATATATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU290377 lncRNA downstream 23357 7711683 ~ 7712007 (-) True CI01000059_07712901_07717294
TU290401 lncRNA downstream 25402 7709593 ~ 7709962 (-) True G255855
TU290391 lncRNA downstream 50519 7684637 ~ 7684845 (-) True G255845
TU290386 lncRNA downstream 62535 7672048 ~ 7672829 (-) True G255840
TU290231 lncRNA downstream 408050 7274422 ~ 7327314 (-) True G255697
TU290414 lncRNA upstream 23340 7762532 ~ 7762743 (-) True G255866
TU290420 lncRNA upstream 27363 7766555 ~ 7766761 (-) True G255870
TU290438 lncRNA upstream 96197 7835389 ~ 7836068 (-) True G255886
TU290447 lncRNA upstream 129023 7868215 ~ 7869519 (-) True G255894
TU290467 lncRNA upstream 133386 7888738 ~ 7888806 (-) True G255908
CI01000059_07712901_07717294.mRNA mRNA downstream 17971 7711624 ~ 7717393 (-) False CI01000059_07712901_07717294
CI01000059_07656183_07663641.mRNA mRNA downstream 71717 7656046 ~ 7663647 (-) True CI01000059_07656183_07663641
CI01000059_07650742_07651278.mRNA mRNA downstream 81549 7650601 ~ 7653815 (-) True CI01000059_07650742_07651278
CI01000059_07630261_07641794.mRNA mRNA downstream 93570 7629789 ~ 7641794 (-) True CI01000059_07630261_07641794
CI01000059_07614355_07620651.mRNA mRNA downstream 114553 7614039 ~ 7620811 (-) True CI01000059_07614355_07620651
CI01000059_07747741_07755772.mRNA mRNA upstream 8277 7747469 ~ 7755772 (-) True CI01000059_07747741_07755772
CI01000059_07776352_07781815.mRNA mRNA upstream 36783 7775975 ~ 7781815 (-) True CI01000059_07776352_07781815
CI01000059_07796952_07805283.mRNA mRNA upstream 57599 7796791 ~ 7805283 (-) True CI01000059_07796952_07805283
CI01000059_07872877_07881890.mRNA mRNA upstream 132819 7872011 ~ 7883054 (-) False CI01000059_07872877_07881890
CI01000059_07941129_07955904.mRNA mRNA upstream 201292 7940484 ~ 7956194 (-) True CI01000059_07941129_07955904
TU289512 other downstream 1492572 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 2497065 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 2981282 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 4263455 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 5635697 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 1242504 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 1242504 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 1715024 9454216 ~ 9599008 (-) True G257014

Expression Profile