RNA id: TCONS_00016950


Basic Information

Item Value
RNA id TCONS_00016950
length 582
lncRNA type retained_intron
GC content 0.39
exon number 5
gene id XLOC_008465
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21262917 ~ 21275683 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACTAGGGAAGTGGATCAAATCTCCAACAgacaatttattttcttttatgatGAGCAGTGACACTTGAATCTACATCACAGTACTGAAGAAAAGATCTGTTTAATTTCAACCAttcaacaaacattttttgtgtttacaGAATTGCTCTGTCTAAGCAGAATTTTACTCTTAAGTATGATACAAACATTCCTCGACAAGTGGTGAGACTTTGATTTGAAGTTGCTtatcttgatttaaatttttaaacgtGTATTGATAAGATTATAATGTACTACATTTCTTTTATCACCTCTAGGGATTAGCTGGCAGTAGTGCTATTGTGTCTGCCACCTTGAAGTGCCTGATGAAGTTTTACAACATCACAGACAATGATCTTCCACAACCAGTCAGAGCCAACTTCATCCTCAACGTAGAGACTGATGAGCTGTTCATCACAGCTGGTCTACAGGACAGAGTTGTGCAGGTCTACGAGGGCCTGGTTTACATGGACTTCAGCAAACAGCTTATGGATGAACGTGGTTATGGAGAATACATTCCCTTGGACATGCGTGATCTTCCCATGTTCTGGCTGGCTTACTTG

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0047940 glucuronokinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-36 Enables glucuronokinase activity. Predicted to act upstream of or within biosynthetic process.

Ensembl:

ensembl_id ENSDART00000154581

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018928 lncRNA upstream 17666 21247526 ~ 21251557 (+) False XLOC_008462
TCONS_00018929 lncRNA upstream 17666 21249466 ~ 21251557 (+) True XLOC_008462
TCONS_00018773 lncRNA upstream 23389 21240424 ~ 21245834 (+) True XLOC_008461
TCONS_00018772 lncRNA upstream 104650 21164035 ~ 21164573 (+) True XLOC_008457
TCONS_00018926 lncRNA upstream 175607 21004733 ~ 21093616 (+) True XLOC_008455
TCONS_00018930 lncRNA downstream 50489 21323046 ~ 21427967 (+) False XLOC_008467
TCONS_00018931 lncRNA downstream 50499 21323056 ~ 21495896 (+) False XLOC_008467
TCONS_00018932 lncRNA downstream 50504 21323061 ~ 21390208 (+) False XLOC_008467
TCONS_00018933 lncRNA downstream 50520 21323077 ~ 21390208 (+) False XLOC_008467
TCONS_00018934 lncRNA downstream 62410 21334967 ~ 21463156 (+) False XLOC_008467
TCONS_00016938 mRNA upstream 6656 21252532 ~ 21262567 (+) False XLOC_008464
TCONS_00016939 mRNA upstream 8031 21252558 ~ 21261192 (+) False XLOC_008464
TCONS_00016948 mRNA upstream 8303 21254800 ~ 21260920 (+) True XLOC_008464
TCONS_00016941 mRNA upstream 10646 21252579 ~ 21258577 (+) False XLOC_008464
TCONS_00016944 mRNA upstream 10866 21252585 ~ 21258357 (+) False XLOC_008464
TCONS_00016951 mRNA downstream 4178 21276735 ~ 21320638 (+) True XLOC_008466
TCONS_00016956 mRNA downstream 399724 21672281 ~ 21673630 (+) False XLOC_008471
TCONS_00016957 mRNA downstream 400143 21672700 ~ 21673452 (+) True XLOC_008471
TCONS_00016959 mRNA downstream 435343 21707900 ~ 21715436 (+) False XLOC_008472
TCONS_00016961 mRNA downstream 439114 21711671 ~ 21717167 (+) False XLOC_008472
TCONS_00016942 other upstream 8031 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016937 other upstream 16941 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016935 other upstream 70937 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016934 other upstream 92174 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016921 other upstream 733739 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016953 other downstream 165076 21437633 ~ 21437728 (+) True XLOC_008468
TCONS_00016954 other downstream 165319 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016955 other downstream 175099 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016960 other downstream 439103 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016964 other downstream 494967 21767524 ~ 21770009 (+) True XLOC_008473

Expression Profile

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