RNA id: CI01000059_08107732_08108249.mRNA


Basic Information

Item Value
RNA id CI01000059_08107732_08108249.mRNA
length 1003
RNA type mRNA
GC content 0.49
exon number 2
gene id CI01000059_08107732_08108249
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8107448 ~ 8108557 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGGACCACAGAAGACGATCAGGAGCGAGTGCTCATTGTGTTCACAACTCCTGTCCCTCGTTTGTTCTGAGATGCAGTGTGTTAAAAATAATCCAGCGCTCTGCAGCGAGACTCACACACACACACACACACACAGAGGCAGACAGGCCGGAGCCGGCGCTCGCCTCACACACAGACGACAGCAGGAAGAACCCAGCGCTGCACAAACGCCTCCGATGCAGCGTATGGATTTTCTCTCTTTTATGAGCGTCTCACTGGCCGGAGCCTCTAATATGCCCATAAATGTGCTGTACACAAACAGAAATAGATGCTCATCAGTTTACCACAGCTCAGACTACAGCCATCCTGCTGCTCCGCCGCGTCTGCATCCTCGCTTTTCTCCAATGCGCTTTTCAGGAACCCTAGATTTTCCTTTTTTGACCACTCACGCATCACGGAGGCATCTTCAAACGCAGCAGTGATGGCTGAAGCGAGCAGGAAAGGTGGCACAGCTTATCGCGCCGCGCCCGTCCTGCAGCGCGCCGAGCGGGCAATTATCCTGACGCAGTTCCTACACAACAAACACAATAAACGCACACGGAGGAGCGCCGTCGCCCTGCGGCTCTGGAATACCTGTGACGCATCAGGAAATTCCCACAATGCTTTGTTTTTCAAAGTCAGCATTTACGTGGGAATTCAGCCAGTCATTAAAGCAGAAGTTTTAGTGAATTTGGCCTGAAGAGGCATCTAAGTCAGAGACGTTTGATTGATAAAGACCAGTGATAGGCATCAGCTGAAGGGACGGGACGAACCATAAAGCGTTTATTGCCGTCATTAAACTTTGCTTAGGCAGTGACAGTGTTCAGAGTGATTTCAGATCATGCACTGATTCAGCACACCTGTGTAATGAGACACTGAGGTAGTGAAAGCAAACATCCCCGTTCCTGAAATAATATACTTTAGAAATAGTCACCTGACAGCGAACTCTTGCAGGTGAATTCTGGGAATTACTGCAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290537 lncRNA downstream 26865 8080377 ~ 8080583 (-) True G255970
TU290534 lncRNA downstream 30648 8076569 ~ 8076800 (-) True G255967
TU290531 lncRNA downstream 35649 8071189 ~ 8071799 (-) True G255964
TU290498 lncRNA downstream 39982 8005107 ~ 8067466 (-) True G255937
TU290509 lncRNA downstream 79464 8027628 ~ 8027984 (-) True G255942
TU290561 lncRNA upstream 6721 8115278 ~ 8115480 (-) True G255994
TU291231 lncRNA upstream 19894 8128451 ~ 8164532 (-) True G256584
TU291217 lncRNA upstream 73099 8181656 ~ 8183011 (-) True G256571
TU291284 lncRNA upstream 125664 8234221 ~ 8234508 (-) True G256633
TU291287 lncRNA upstream 140965 8249522 ~ 8250791 (-) True G256636
CI01000059_08031635_08038209.mRNA mRNA downstream 69239 8030188 ~ 8038209 (-) True CI01000059_08031635_08038209
CI01000059_07977090_07983037.mRNA mRNA downstream 124411 7976964 ~ 7983037 (-) True CI01000059_07977090_07983037
CI01000059_07941129_07955904.mRNA mRNA downstream 151254 7940484 ~ 7956194 (-) True CI01000059_07941129_07955904
CI01000059_07872877_07881890.mRNA mRNA downstream 224394 7872011 ~ 7883054 (-) False CI01000059_07872877_07881890
CI01000059_07796952_07805283.mRNA mRNA downstream 302165 7796791 ~ 7805283 (-) True CI01000059_07796952_07805283
CI01000059_08188428_08219512.mRNA mRNA upstream 79497 8188054 ~ 8219512 (-) True CI01000059_08188428_08219512
CI01000059_08221332_08227552.mRNA mRNA upstream 112713 8221270 ~ 8227552 (-) True CI01000059_08221332_08227552
CI01000059_08251075_08251545.mRNA mRNA upstream 142397 8250954 ~ 8251545 (-) True CI01000059_08251075_08251545
CI01000059_08263161_08266360.mRNA mRNA upstream 154440 8262997 ~ 8266360 (-) True CI01000059_08263161_08266360
CI01000059_08286190_08290114.mRNA mRNA upstream 177543 8286100 ~ 8290114 (-) True CI01000059_08286190_08290114
TU289512 other downstream 1864656 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 2869149 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 3353366 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 4635539 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 6007781 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 873139 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 873139 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 1345659 9454216 ~ 9599008 (-) True G257014

Expression Profile