RNA id: CI01000059_08221332_08227552.mRNA


Basic Information

Item Value
RNA id CI01000059_08221332_08227552.mRNA
length 992
RNA type mRNA
GC content 0.52
exon number 7
gene id CI01000059_08221332_08227552
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8221270 ~ 8227552 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGGTGGAGATGAGGCTTCCAGCGCTACACAAACACATTTCCATCACACCATTACAGTCTCACCGGGACGACAAACACCTGGTGGTCCCTGGCGATGTCATCACATCTGACACGGGCTTCATGAGGGGTCATGGCACATACATGGATGAAGAGCGGCTCACAGCTTCAGTAGCTGGACAGGTGGAGCGGGTCAACAAACTCATCTGTGTGAAGCCGCTGAAGACCAGGTACAACGGTGAGGTCGGCGATGTGGTTGTTGGCAGAATCACTGAGGTTTGTGCCGTTTATTGGTTTGTGATGGATCTGCAATGGTCGCCTCTGAAGCTCTCTGATCATGTGTGTCTCTATAAACGTCCAGGTGCAGCAGAAACGATGGAAAGTCGAGACGAATTCACGTCTGGATTCAGTGCTGCTGCTTTCGTCAGTCAATCTGCCTGGAGGAGAGCTGCTGTGTTCTTTAACCGTTCAAAGGCAGAGGTTCAGTCGATCTTCTCAGATGGCGCTCTCTCTCTGCACACTCGCAGCTTGAAGTACGGGAAGCTGGGTCAGGGTGTGCTGGTTCTAGTATCACCGTCGCTGGTGAAGAGGCAGAAAACTCACTTCCACAACCTGCCGTGCGGAGCATCCGTAATACTGGGCAACAACGGCTATGTGTGGCTGTATCCCACACCGGAACAGCAGGACGAGGAGGCCGGCGGATACTACACCAGCATGGAGCCCGTGTCTCTGTCCGACCGGGAGGTGATTTCAAGGCTCAGGAACTGTTTGTTGGCTCTCGTGGCTCATAAGGTTTTGCTGTATGACACCAGTGTGCTTTACTGCTACGAAGCGTCTCTTCCGCACCAGATTAAAGACATCCTAAAGCCAGAGGTCACGGAGATCATCATTTTGGAGACACGACAGCGCCTAGTTGAGCACGAAGGATAAACCACACACTGTCCTGCTTTAACTGTTTGATACAAACCCTATAGTTGATGTCTTGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291217 lncRNA downstream 38259 8181656 ~ 8183011 (-) True G256571
TU291231 lncRNA downstream 56738 8128451 ~ 8164532 (-) True G256584
TU290561 lncRNA downstream 105790 8115278 ~ 8115480 (-) True G255994
TU290537 lncRNA downstream 140687 8080377 ~ 8080583 (-) True G255970
TU290534 lncRNA downstream 144470 8076569 ~ 8076800 (-) True G255967
TU291284 lncRNA upstream 6669 8234221 ~ 8234508 (-) True G256633
TU291287 lncRNA upstream 21970 8249522 ~ 8250791 (-) True G256636
TU291298 lncRNA upstream 33913 8261465 ~ 8261681 (-) True G256643
TU291279 lncRNA upstream 54558 8282110 ~ 8283205 (-) True G256628
TU291277 lncRNA upstream 96117 8323669 ~ 8324719 (-) True G256626
CI01000059_08188428_08219512.mRNA mRNA downstream 1758 8188054 ~ 8219512 (-) True CI01000059_08188428_08219512
CI01000059_08107732_08108249.mRNA mRNA downstream 112713 8107448 ~ 8108557 (-) True CI01000059_08107732_08108249
CI01000059_08031635_08038209.mRNA mRNA downstream 183061 8030188 ~ 8038209 (-) True CI01000059_08031635_08038209
CI01000059_07977090_07983037.mRNA mRNA downstream 238233 7976964 ~ 7983037 (-) True CI01000059_07977090_07983037
CI01000059_07941129_07955904.mRNA mRNA downstream 265076 7940484 ~ 7956194 (-) True CI01000059_07941129_07955904
CI01000059_08251075_08251545.mRNA mRNA upstream 23402 8250954 ~ 8251545 (-) True CI01000059_08251075_08251545
CI01000059_08263161_08266360.mRNA mRNA upstream 35445 8262997 ~ 8266360 (-) True CI01000059_08263161_08266360
CI01000059_08286190_08290114.mRNA mRNA upstream 58548 8286100 ~ 8290114 (-) True CI01000059_08286190_08290114
CI01000059_08334902_08338268.mRNA mRNA upstream 107191 8334743 ~ 8338268 (-) True CI01000059_08334902_08338268
CI01000059_08354408_08356482.mRNA mRNA upstream 125056 8352608 ~ 8356552 (-) True CI01000059_08354408_08356482
TU289512 other downstream 1978478 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 2982971 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 3467188 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 4749361 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 6121603 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 754144 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 754144 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 1226664 9454216 ~ 9599008 (-) True G257014

Expression Profile