RNA id: CI01000059_10006537_10067807.mRNA



Basic Information


Item Value
RNA id CI01000059_10006537_10067807.mRNA
length 1510
RNA type mRNA
GC content 0.49
exon number 7
gene id CI01000059_10006537_10067807
representative True

Chromosome Information


Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 10006445 ~ 10067845 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGGCCGCTTTATTAAGTTGAGAAGATGGATCGAGGAGAATGACTTGTATTGATTTCGGTGCTGGGCTGAGAAGCCACATCATTCTTCAGACAATAACAGACCAGCTTCCTCTAGCATCTGTGCTTGTCTTTCTCTTCTATCTGACGGTGGGGAAATATAAATATATCAAAACTTCATCTGTGACACATGATCTGGTATTAAGATCCAGATCAGATGATCTGAAGATAACTGCTCAGAAATGTGATTGTCTTCTGAGTCTGAAAGCAACTTCTCTGGAGCAAAAAGCAAGAGTGTGCCAGTGTTTGAGCGAGAACATCCAAAAACAGCTTCAGCTGCACGGAAGACAGACGTTCTGCCCACCTCAGCAGGCCATTTTCAGCAGTGCAAACAGAGCAGATAGGGCTACCATGCTGGAACCCAAGCAAGATGAGCCATGTGACCCCAGGGGCCGGAAAACGACCTCTGAGGATGACCAATCCCTGGGCAACCTGTCCGATGTGTCGGCCACCACTGCGAGCAGCCTTCAGTCCAGGAGTCTCGCCCTGCTGGAGGACGTGTGTACCTCTCTGGAGGAGACCTGCCACCTGGTTCCACCAACACCTCCGCCTTCCACTGAGGGAGAAGATGAGAAAAGCACTGAGAGCAGCGTGAATGAGATATGGAGGGAGGATGAAGGCAAAGAGAAAGAGGAGGAGATGAGGAGCTCTGAGGAGAAAGAAGAGCGGGAGTTCTTACATGCACATCCAAGAGAGTGTGAAGATGACAAACAGCTACTTGTTGATGAGGACAATGCTTCAGAGGCGGTGGACACGAACGCTCCTCCTTCATCATCTTCTTCATCTTTTGTCATCCCTGAGCTGCGATTAGATCGCTCCTTCAGTGCGGACGCCCTCTCCACTCCTGGCACCGATGAAGAACGCACACACAGCGAGGGCAGTCTTCTCCAGGACCCCCGCACTACCTGCTTCACATCTGATAATGCCATCAACTGCATGGAGGGGTCAGGGACACACAAGGGCGGCTGGTCGCTTCCGTCACCCAAAACCCTGAAGAAAGAGCTGACTAAAAATGGAGGGTCCATGCACCAGCTGTGTATGCTGTTCTCCGGAAGAAAACTGAGTGCCGGCTCCGAATGCAGCTGTGACGTGGGTCCTGACGGGACCAAGAAGAAGAAATCCAAAAACCTAACAATAGAATCAGAACGACTCTCTGGGCTTCAGCTCCCTGTGTTCTTTGGTCGGATAACTACATCTACTGTGAATTTTGAGGTCAACACAATAAAGGAAAGGTTTTTACTGTCTGGTGAAGTGGGACTGTCTGGAATAATGTCTGGAGTCGCTAAATCTGAGCTTGAAGAAAGTTCAGTGAATGTTTCCTTTGATACAGGGTTTTTTTTTTCCACAAAGAGACGTGTCTAGTCTCCTTCAGACCTAGAGCTTCAAGCTAATCTGTGGTGAAATGATCTGGATGTTTATCAGCCACTGCTTTTTCAGATCTGATGGGGATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU291977 lncRNA downstream 30405 9975614 ~ 9976040 (-) True G257276
TU291976 lncRNA downstream 31850 9974360 ~ 9974595 (-) True G257275
TU291973 lncRNA downstream 37770 9968436 ~ 9968675 (-) True G257272
TU291971 lncRNA downstream 41177 9965042 ~ 9965268 (-) True G257270
TU291946 lncRNA downstream 229970 9776206 ~ 9776475 (-) True G257245
TU292002 lncRNA upstream 29871 10097716 ~ 10097915 (-) True G257299
TU291757 lncRNA upstream 48520 10116365 ~ 10153140 (-) False G257063
TU291758 lncRNA upstream 48520 10116365 ~ 10204537 (-) True G257063
TU291782 lncRNA upstream 134569 10202414 ~ 10203467 (-) True G257085
TU291769 lncRNA upstream 139003 10206848 ~ 10207701 (-) True G257073
CI01000059_09996144_10002811.mRNA mRNA downstream 3583 9996053 ~ 10002862 (-) True CI01000059_09996144_10002811
CI01000059_09990989_09995182.mRNA mRNA downstream 11194 9989503 ~ 9995251 (-) True CI01000059_09990989_09995182
CI01000059_09908635_09925766.mRNA mRNA downstream 80679 9907887 ~ 9925766 (-) True CI01000059_09908635_09925766
CI01000059_09797419_09887264.mRNA mRNA downstream 119181 9797380 ~ 9887264 (-) True CI01000059_09797419_09887264
CI01000059_09783667_09789126.mRNA mRNA downstream 217147 9783629 ~ 9789298 (-) True CI01000059_09783667_09789126
CI01000059_10078245_10087217.mRNA mRNA upstream 10357 10078202 ~ 10087217 (-) True CI01000059_10078245_10087217
CI01000059_10112766_10123616.mRNA mRNA upstream 44465 10112310 ~ 10123616 (-) True CI01000059_10112766_10123616
CI01000059_10226065_10230940.mRNA mRNA upstream 158001 10225846 ~ 10230940 (-) True CI01000059_10226065_10230940
CI01000059_10234027_10257208.mRNA mRNA upstream 165313 10233158 ~ 10257208 (-) True CI01000059_10234027_10257208
CI01000059_10273383_10276157.mRNA mRNA upstream 204773 10272618 ~ 10276157 (-) True CI01000059_10273383_10276157
TU291707 other downstream 407437 9454216 ~ 9599008 (-) True G257014
TU291574 other downstream 1024328 8981696 ~ 8982117 (-) False G256890
TU291575 other downstream 1024328 8981696 ~ 8982117 (-) True G256890
TU289512 other downstream 3763653 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 4768146 5237786 ~ 5238299 (-) True G254203

Expression Profile