RNA id: TCONS_00018936


Basic Information

Item Value
RNA id TCONS_00018936
length 1055
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id XLOC_008467
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21323046 ~ 21495896 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGTGAACGTGGATTACGCTGGAAGAGATGGACGGCATTGACAGATGACTGGAGAGGAGAACAAGAAGTATGGGGCCCTTTGTTGCCATGCTGAGAGAGACGGATCGGgaaTTCATTGAAAAATGCATCCGCAAGTTTGGTGGCTCAAGGCACAAAGTCATCTTTATATTATGGGGGAATTTGGCTCCGAGTGCCTGCAAAGCGTCTTTTAACACCTGACAGACAATGAATGTGAGGTCATTCGCAGGGTGGTGCTGTATTGGTCTCAGATTCCTCTCGACATGCATCATCAGGCTGGATGGGACTGCGGTGGAACAGAGTGGATAGTGTTGCAGTGGTTCATGGATAGAGGGAACAAAGAGACTCTTCTTGTCCTCTGAGCCTCACATGCATCATCTTGCATAAAGCTTGTTCTGGCTGTACAGGGATGCTATCTTCTTGTTTTTCCAATACATTGTAAAGAGGTGGAGATAACATAAAGCAAAGAGACGAGGTGTGCCTTGAACCTTACCGCATATTAGAGCCAAATTACATTAATTGGTCCACCGGTGCTGTTTTCTCCTGACTGCAGACCACATTGTAATGAAAACAAAACGCCACTTTGGAGCATTTTCTTTCCCACGAGATTAACAGTAATTAACCAGTATCACTGCTGGGCAGCAGGTGATGTCTCAGTCAGGGACAATGGGCTGAATGGTCATGCTACATTTTGTGGTTGTAATTGAGGCACAGTTTACATGTAAAACAGGCACATGTTTTAACCTCTGTCAACttcagtttgttttaattttaattttaatattttgattgttttactAAATGCAGTATTATCCCTTTGACTGTCGCTCTACAAAATGTTTGActgtgtttttactgttttaaataatgactgttaaagtaatttaaaaaattaaagtcgtttttaaataatggtttacacacagcattgctggtttacaaaaaaataacaattaacaaTCACAATCCTGTTTggctactacacttgattttgaaaagaaaaaaaaacatgttaaatgagaatctgaaatatttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016950 lncRNA upstream 62532 21269223 ~ 21272557 (+) True XLOC_008465
TCONS_00018928 lncRNA upstream 83532 21247526 ~ 21251557 (+) False XLOC_008462
TCONS_00018929 lncRNA upstream 83532 21249466 ~ 21251557 (+) True XLOC_008462
TCONS_00018773 lncRNA upstream 89255 21240424 ~ 21245834 (+) True XLOC_008461
TCONS_00018772 lncRNA upstream 170516 21164035 ~ 21164573 (+) True XLOC_008457
TCONS_00018938 lncRNA downstream 18208 21446175 ~ 21463156 (+) False XLOC_008467
TCONS_00018939 lncRNA downstream 18214 21446181 ~ 21463156 (+) False XLOC_008467
TCONS_00018940 lncRNA downstream 18274 21446241 ~ 21463156 (+) False XLOC_008467
TCONS_00018941 lncRNA downstream 18274 21446241 ~ 21492008 (+) False XLOC_008467
TCONS_00018942 lncRNA downstream 18274 21446241 ~ 21495896 (+) False XLOC_008467
TCONS_00016951 mRNA upstream 14451 21276735 ~ 21320638 (+) True XLOC_008466
TCONS_00016949 mRNA upstream 59406 21262917 ~ 21275683 (+) False XLOC_008465
TCONS_00016948 mRNA upstream 74169 21254800 ~ 21260920 (+) True XLOC_008464
TCONS_00016947 mRNA upstream 76765 21252617 ~ 21258324 (+) False XLOC_008464
TCONS_00016946 mRNA upstream 77253 21252598 ~ 21257836 (+) False XLOC_008464
TCONS_00016956 mRNA downstream 244314 21672281 ~ 21673630 (+) False XLOC_008471
TCONS_00016957 mRNA downstream 244733 21672700 ~ 21673452 (+) True XLOC_008471
TCONS_00016959 mRNA downstream 279933 21707900 ~ 21715436 (+) False XLOC_008472
TCONS_00016961 mRNA downstream 283704 21711671 ~ 21717167 (+) False XLOC_008472
TCONS_00016962 mRNA downstream 284361 21712328 ~ 21719970 (+) True XLOC_008472
TCONS_00016942 other upstream 73897 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016937 other upstream 82807 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016935 other upstream 136803 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016934 other upstream 158040 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016921 other upstream 799605 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016953 other downstream 9666 21437633 ~ 21437728 (+) True XLOC_008468
TCONS_00016954 other downstream 9909 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016955 other downstream 19689 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016960 other downstream 283693 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016964 other downstream 339557 21767524 ~ 21770009 (+) True XLOC_008473

Expression Profile

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