RNA id: TU285274


Basic Information

Item Value
RNA id TU285274
length 1287
lncRNA type inter_gene
GC content 0.35
exon number 5
gene id G251314
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 95696 ~ 99149 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAACTCAATAGATTCAATTATCCTCTACTTAAAATAATGAGTAGTACGAAATTTTTTTGAGTGGTCATGCGCAGTTCTACCTGTAGGTGGAGTCAATTTGCAACATATTCTGAGGGGAGAAGCACATGGAACGGATCCGTTTTGTGGAATGAGATATGCATTGGAAATATCAATGCAGAGTTCAATCACATCACAATCAAGAAGCCTCAATCAAGAATTCTTCTCAGCACTTTATCAACTTGCAGCTTGATTTCTGGAAATTTGTGCAACAAAGAAAGTGGCAGTTGAAAAGAGAGTTTCTTGCGCAAATTAAATCTATGCACTGTCATCACTGCTAAGTGCACAGTTCTTCATGGCCTTCCTCTTATTCTTGGAGAAGAAACCGCTGATTTTTTTAAACAATGCTGACAGGACTGTGATTGTGACACACCCTTCTTGGGGATTCTGACTGTGATAACAGAAGACAGCCAGGATTCTTCCTCCACAAGAACTACATTTGGAGTCTTCATGCACAGCATTATTCTAGACTGAGCCATTGTCATGGATGAACTTGAAAACCTTCCAGGTGCCATGTGACTAATTTTTGGGTTGATATATGCCAAATTTGGAGTTTTTCTTTCCCTTGGACACAATTCTCTGAAACCAAAACTACATTCACTTTAAAACCCTTCTGTTGATGTAAGCAAAGGCTGTTTGAGATCGTTAAAGGCTTAGTTCACCCAAAAATGTAAATTCTGTCATCAGTTTTTCACTCTCATGTTGTTTGACTTTGGTTAGTCTTTCAAACACAAATTTAGATATTTTTAAAGAAAACAGGCTGGAAAACTTTTTGGATCTTTTAAGTTTTGGTTACCTGGACTTTCAGTTGGAGGGACAGAAACCTCTCAGATTTCATTAAAAATATCTTCATTTATGTTTCAAAGTCTAACCAAAGTCTTATGGGTTTGTGACATCATGAGGGTGAGTAAATGATCTGAGAATTTCATTTTTTTGTGAACTATCTCTTTAATCTTGTGGTTGCACTAAAGTCAACATTCTTTTTAATTAAAGTGTTAAATTGTCACCTGCCAAAGTTTAAACTGTCAAAATTAAGCTAACATTGATTTTTGTTTCATGGTCAGCTATTCAGTTTCTTGTCAAAAGACTGTTAGTATTATTGGTTTATTCATCAATCATGATTTGTAATCCATATTGTTACATTAATGAAAAATGTTTAGAATTTAGGGGTGCCAGAATGGCATTGTTTGGTACATTGTAGTGTCTGAAGAAAATTGATGAGCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285315 lncRNA upstream 20575 119724 ~ 120008 (-) True G251351
TU285299 lncRNA upstream 50772 149921 ~ 150157 (-) True G251335
TU285325 lncRNA upstream 136238 235387 ~ 240320 (-) True G251359
TU285326 lncRNA upstream 144183 243332 ~ 243677 (-) True G251360
TU285328 lncRNA upstream 145293 244442 ~ 244659 (-) True G251362
CI01000059_00075079_00094725.mRNA mRNA downstream 971 75079 ~ 94725 (-) True CI01000059_00075079_00094725
CI01000059_00056355_00058350.mRNA mRNA downstream 37009 55972 ~ 58687 (-) True CI01000059_00056355_00058350
CI01000059_00013963_00014292.mRNA mRNA downstream 81351 13775 ~ 14345 (-) True CI01000059_00013963_00014292
CI01000059_00001701_00003260.mRNA mRNA downstream 91385 1695 ~ 4311 (-) True CI01000059_00001701_00003260
CI01000059_00101987_00103012.mRNA mRNA upstream 1813 100962 ~ 103012 (-) True CI01000059_00101987_00103012
CI01000059_00130626_00143117.mRNA mRNA upstream 31057 130206 ~ 143117 (-) True CI01000059_00130626_00143117
CI01000059_00144949_00157845.mRNA mRNA upstream 45184 144333 ~ 157885 (-) True CI01000059_00144949_00157845
CI01000059_00185897_00188899.mRNA mRNA upstream 86688 185837 ~ 189044 (-) True CI01000059_00185897_00188899
CI01000059_00190249_00194415.mRNA mRNA upstream 90961 190110 ~ 194464 (-) True CI01000059_00190249_00194415
TU285270 other upstream 270782 369931 ~ 373400 (-) True G251313
TU285269 other upstream 273829 372978 ~ 373400 (-) True G251313
TU285506 other upstream 1152567 1255599 ~ 1255662 (-) True G251512
TU286339 other upstream 1997548 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 3372326 3471475 ~ 3471909 (-) True G253013

Expression Profile