RNA id: TU285449


Basic Information

Item Value
RNA id TU285449
length 252
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G251469
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 545455 ~ 545706 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCGTCCTGAGTCCACATCAGCGTTGCCCTGGAAACTCACGAGGAGCACCTGCTCACAGGTCGTCACAGGCTGATCGGCCACACCTGCGGCTGATCAACCTGCCTGCATATAAGCAGCATGCTCACAGACAAAGGTGGAGAAGCCTCTCCATGAGACAGCAGACTAACGTTCTCTCTCTATCCCGTTCCAGAAAGCAGTGTGTGACCGATCAGCACCGCCACGAGCACCGCACGGATTCACCCACACCTGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285383 lncRNA downstream 111985 432911 ~ 433470 (-) True G251407
TU285398 lncRNA downstream 133830 406179 ~ 411625 (-) True G251421
TU285396 lncRNA downstream 134842 405725 ~ 410613 (-) True G251420
TU285347 lncRNA downstream 214159 330999 ~ 331296 (-) True G251375
TU285278 lncRNA downstream 238986 301527 ~ 306469 (-) True G251315
TU285458 lncRNA upstream 13921 559627 ~ 559991 (-) True G251478
TU285369 lncRNA upstream 41224 586930 ~ 594125 (-) True G251393
TU285464 lncRNA upstream 66457 612163 ~ 612566 (-) True G251484
TU285512 lncRNA upstream 84272 629978 ~ 630230 (-) True G251518
TU285526 lncRNA upstream 110926 656632 ~ 656864 (-) True G251528
CI01000059_00513674_00528840.mRNA mRNA downstream 15506 513469 ~ 529949 (-) True CI01000059_00513674_00528840
CI01000059_00476366_00482307.mRNA mRNA downstream 63148 475994 ~ 482307 (-) True CI01000059_00476366_00482307
CI01000059_00456370_00458895.mRNA mRNA downstream 86015 456284 ~ 459440 (-) True CI01000059_00456370_00458895
CI01000059_00378673_00379901.mRNA mRNA downstream 165431 378673 ~ 380024 (-) False CI01000059_00378673_00379901
CI01000059_00326063_00336542.mRNA mRNA downstream 208913 326037 ~ 336542 (-) True CI01000059_00326063_00336542
CI01000059_00570850_00600462.mRNA mRNA upstream 25144 570850 ~ 600858 (-) True CI01000059_00570850_00600462
CI01000059_00697568_00720771.mRNA mRNA upstream 151862 697568 ~ 720771 (-) True CI01000059_00697568_00720771
CI01000059_00767393_00826328.mRNA mRNA upstream 220027 765733 ~ 826581 (-) True CI01000059_00767393_00826328
CI01000059_00853242_00855219.mRNA mRNA upstream 307048 852754 ~ 855284 (-) True CI01000059_00853242_00855219
CI01000059_00867492_00873239.mRNA mRNA upstream 320959 866665 ~ 873239 (-) True CI01000059_00867492_00873239
TU285270 other downstream 165318 369931 ~ 373400 (-) True G251313
TU285506 other upstream 706010 1255599 ~ 1255662 (-) True G251512
TU286339 other upstream 1550991 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 2925769 3471475 ~ 3471909 (-) True G253013
TU288177 other upstream 4207832 4753538 ~ 4754082 (-) True G253914
TU288508 other upstream 4692080 5237786 ~ 5238299 (-) True G254203

Expression Profile