RNA id: TCONS_00018939


Basic Information

Item Value
RNA id TCONS_00018939
length 2074
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_008467
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21323046 ~ 21495896 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACGTTTTTTTCCCCCTCCTCTTTTCAATTGCATGCATCTCAGTCTGCTCAACTCCGAGAGAGAGgaagagtgtgcatgtgtgtgtcctgggagagagagagagagagcgagagagagagagatggcgaGGGAGGGAGAAAATGAAATGTAAGACAGATACGGAGAGTGAAAGAGAAGAAGGGGGTGTGGAGAGAGCGAGCTAGCGAGAGTGGAGAGCCAGTAACACTGTGCATTGATGCATTTGCTGCGTCTCAGTCGCGCTCTTACTGTGGGACGTAGCCGAGGGTTTTTGGCAACGGCAGGCTGCCTGTTTTCCATCATCCAGTCGAGTTGGACCTGGAATAGGGATATATGCGTAAACGGAGTTGCCACGGCTGAGCAGCGCTGGATGAGTGAGGCTGCGAGAGAACTGTGAATGGCTACATGCTCATCCTCATCCTCGCGCCAGGTACATAACAAATCATCAAAGCTGGGATTAAAATTTCGTGAAGGAGCAGCTTTGACTGCTGGAAGACTTAAGCGTATTAGCTTTAAAACCAAGATGGGAGTTTCAAGTGATGTATGGCAGACTTCAAAGATGTTTTAATCTGTCGGTAGGCATGCTCTTGCACAGCCTATTTATATTAGAACACAGTGTTTCTTCTGCCTGCACGTCCTAATCAATGGTTTCTCCGGCTAGACCCAGGCTGATGGTGATGTTAACCAGTTATTAAACAGCTGCACTTCCTCAGCTCTGCTTTCTCTGCTCTCTTTTAGTGGCTCGCCAGAAGCTGATTAGAAATACTCAACTGTTTTGTCCCATTGTGATGAATATTTGATGATTCAGTGGTCATAACTTGACTTCTGTTTTGCTCGTAAATTATGGCATATGTATTAGGAAActtaagaatgaatgaatgtctttgaATTATGTCAATAtactcacggcaattcgtaactttttgatttagtggctaattgatTTTAATTTGTACGATCTGATTCgtgtaatttaatacaatttgctcatcccccaatgacagttgagTTTAGGGGCGGGGCTGAGTGCCACgccacctttttaaaattgtacattttgtacgactaaactcgtataattagccactaaacatgagatcaggctgatatttTAAAAGGTATCAACTATTTGAAAgatgtatttcatttttttttgtattagtttACTTTACATTTTCAGGTAATATGATAAATTACAGCTTCAATTGGACTCGTGTTAGTTAAAAGTAGCTAAAAGCTATCTATCTCCGGTGTTGTGATTGGGGACATTTTTAATCAAAACCTTATTAATTGATTTTTTGCATATAGTAAAGAAACAATGTTATCAATGAGTAATGGTGCTATTCCTTTAAGTTTAACTCATCAAAATAATTCAATGAATTCAGCTCCTTTTTTTAGGTTCGATTTAGGTTGTGTGTTTGAGTcggtttaataaaaatgaaaatgacttaaaatgaattaattatgccAACTTAGTTTGCCCTTAAAAGGGCATCTGTTGCATTTTGGTAGGATTTAATAAGGAAAGACTATGAAAGTAAAACACTTGGAAGATAATAAGTTACAGAtccttttaacaaaaaatatttgacacGTTTATATAAAGGTAATTCTtgaactacgggcacttttatgtcctttgatcatatatgtAGAGTTATTGATGTTTGCCCTGCGCGCTTGCTTTATTTTTAGgaacttctttggtttggtgcgtcaatcttattaatgctattattcaaaaaaggtaatgattcacactcaattaaggaaggctttgtgccgaaacgtctgtgtcTTTAAtgacccgtaaaatgtaagaaaataaaaacaatacaaagcgATTTAGTGCGAATCATTATCTTTCTTTaatcatatatccaaaaatatacataattttgttcaaattcctctttctttgtcaaattaacaataaaacctactttaaaacattttactacctttccattatatttttttcatattattcaacctccttttaggtgtcaaaatcactgttttcaccttgtcacACACCCAGAGTTTAAAACttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018930 lncRNA upstream 18214 21323046 ~ 21427967 (+) False XLOC_008467
TCONS_00018936 lncRNA upstream 18214 21335089 ~ 21427967 (+) False XLOC_008467
TCONS_00016952 lncRNA upstream 42584 21335097 ~ 21403597 (+) False XLOC_008467
TCONS_00018932 lncRNA upstream 55973 21323061 ~ 21390208 (+) False XLOC_008467
TCONS_00018933 lncRNA upstream 55973 21323077 ~ 21390208 (+) False XLOC_008467
TCONS_00018944 lncRNA downstream 57254 21520410 ~ 21542918 (+) True XLOC_008470
TCONS_00018774 lncRNA downstream 209125 21672281 ~ 21673670 (+) False XLOC_008471
TCONS_00016958 lncRNA downstream 244627 21707783 ~ 21715665 (+) False XLOC_008472
TCONS_00018945 lncRNA downstream 317442 21780598 ~ 21860417 (+) False XLOC_008474
TCONS_00018946 lncRNA downstream 317501 21780657 ~ 21846956 (+) False XLOC_008474
TCONS_00016951 mRNA upstream 125543 21276735 ~ 21320638 (+) True XLOC_008466
TCONS_00016949 mRNA upstream 170498 21262917 ~ 21275683 (+) False XLOC_008465
TCONS_00016948 mRNA upstream 185261 21254800 ~ 21260920 (+) True XLOC_008464
TCONS_00016947 mRNA upstream 187857 21252617 ~ 21258324 (+) False XLOC_008464
TCONS_00016946 mRNA upstream 188345 21252598 ~ 21257836 (+) False XLOC_008464
TCONS_00016956 mRNA downstream 209125 21672281 ~ 21673630 (+) False XLOC_008471
TCONS_00016957 mRNA downstream 209544 21672700 ~ 21673452 (+) True XLOC_008471
TCONS_00016959 mRNA downstream 244744 21707900 ~ 21715436 (+) False XLOC_008472
TCONS_00016961 mRNA downstream 248515 21711671 ~ 21717167 (+) False XLOC_008472
TCONS_00016962 mRNA downstream 249172 21712328 ~ 21719970 (+) True XLOC_008472
TCONS_00016954 other upstream 8222 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016953 other upstream 8453 21437633 ~ 21437728 (+) True XLOC_008468
TCONS_00016942 other upstream 184989 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016937 other upstream 193899 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016935 other upstream 247895 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016960 other downstream 248504 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016964 other downstream 304368 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016972 other downstream 539926 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016979 other downstream 950968 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00016984 other downstream 1259526 22722682 ~ 22762438 (+) False XLOC_008489

Expression Profile

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