RNA id: TU285369



Basic Information


Item Value
RNA id TU285369
length 6935
lncRNA type intronic
GC content 0.39
exon number 2
gene id G251393
representative True

Chromosome Information


Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 586930 ~ 594125 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGTAATATATTTTTGTAATAATTTAAACCAAGTTAAACCAAACTTGTTTTGATGAGTTGTCGTGAAGACCTTTTGAGTTTATGTATGTGTATGTATGGTGATAGTTTTTCTTGAATTAAATAATAAAATGTTCATGTGAGCTCTCAGAGCAGCTCTGGAGATGAAGTTCATGTGGAGTGTGTCCTCATAATAAGATATCAGAGGCTGAAAACCCCATGAGCATTACTTGTGCTTTAGTATATGTGTGTAGTAGTCAAAACTGCGGTGCTCATTCACAGACACACAGAACATGTAGATTTCAAAAACATTTATGGTGCGTTATAATGCCTTTTTTTTTTTTTTTTTCCCTTTTGTGGAGCTTAAACGTATCAACCATGAGTACACACAGTATCAGATTTGGATCAATCCTGTCTGAACAATACCCGATCCTGCAAAAAAAAAAGAAGATACTGATTATCGGATTGGTGCATCCTACGATCTACAAAGCGCTTTTCATGGCCATTGAATATATGCAGGAATTGTTTCATCTACTCACTAGTATGGCAGTATTTGAAAAATGCGTATTGTACGCAAAATTGAAACCAGCACTAAATGCAGGGCATCACAAGTGAATTAACCATAAAAATGTTTCAAACAACAAAAAAAATTATCCAAGAGTGTCTGTGAAAACTGTCAGAGAGAGCTGTGGCAGTTAACTGAAAGTGCGACCTGGTTGGGGGAAGGCATTGCTGGTGTTTGAGATAATGTGCTTTTCTCCTTTTCGAGGGGCCTCTTCAGCACTCGATGGAACATCTGCTACATGGAGCAGCTCTCTGAGAGAGTGTTGTTGCTGGGTTTTGTAAAGAATGTGCAATTTACTCTAACCAAGCAGTAAGCAATATATAAACCAAGGTACCGCCCTCTTAAATTGATTTCCAGGGGCACTTTTTGTTTACCTACATAGTTTGAAAACTTATTAAATGTTTGTGTCATTTTTCAATTGGAATAAGACACTACAGGGCTGTTATCAATCCATATTTCTACTGCAGAGGAAATAAAAGCTGCATCTAATATTTTGTTGTATTTATACAGCTATTTAATGAAGCACAGAGGTTATAATACATAATATATACATAATGTATTTTTTCCAGTCTTCTGTTGTGTAATTTTGGTAAGCCCATGCAAATTGAAACCTCAGTTTCCTGTTCTTAGCTGGCAGGAGTGGCACCTGGTGTGGTCTTCTGCTGCTGTAGCCCATTTGCTTCTTGGTTCAACATTTTGTGCATTCAGAGATGCTCTTCTGCAGACCTCGGTTGTAAAGAGTGGTTATTTGAGTAACTGTTGCCTTTATAACTGCTCGAGCCAGTCAGACCATTCTCCTCTGACCCCTGGCATCAACAAGACATTTTCACTCATTGTTATTTTTTCATTTTCTGACCATGCTCTGCAAACCCTAGACATGCAGGGCTCCAGACTGCGCCTAAAACGAGTGGTATTTTTCCTTTGTGATTAATTTCATTAAATACGTGTTAAATACTGAAATAAAAATTTATACAAAAAACATGTTTAAAAACAACAAAAAATAAAACTAAATACAAAACATATTAACTTAAAATAAAAGCAGAAAATATAAAAATCTAATCAGATTCAAAATATTAACGAAAACTATAATAGTATTAAGTGAAAATAGTGACATTCATTTCCCAGAAAAATTACAAGATGAAAATGCTGAAACTGTAAAGAGGAGATATATAAACACAACAGGATGACTAAAAGTAAGTGATTTACAAATTTAAGTTCATTGTTTTGTGGCTCTCAATAAAATTATTTGGCGCCTGTTTTTTTTTTTTCCCCCTATAGGAGCCAATGGCTCCTTAATGATTTTTTTTGGTCTGGTTCCCTGCCCTAGAGATGGTTGTGCATGAAAATACCAGTAGATCAGCAGTTTCTGAAATACTCAGACCAGCCCGTCTGGCACCAATAACCATGCCACGTTCAAAGTCGCTTAAATCACCTTCCCCATTCTGATGTTCAGTTGGAATTGCTACATGATTGATTAGACATTTGCATTAACAAGCAGTTGAACAGGTGTACCTAATAAAGTGGCCAGTGAGATTTTTGTATGTGTGTATATATGTACACACCATAGATGTTCACGAGTCTCTTATCTGGAGTCCGAGTCAAGTCTGATGTCTTTATCACTGGAGTCCGAGTCGAGTCTTGAGTCATTTAAAAAAAATAAAAAAATTCTCATGCTCAAATCCTATTTTTTTTTATCCTAGTTGTATTATATAGACGACAAAATTTATTTTGTTTGAAATTAAGGTCCTATGATGTAAGGGATAATGTAAATCAAGCTTGTTACTTTATAATCCATTACAATGTACAAACATGGCAACACGAGTAGGCTAGTCATTTTCAATACAGTTGCTAAGTGGATGCAACATGGCGCCAGTGAGTCACGGTTTGTTATATTGCAGTTTGTTATACAGCTTCGTTGTTATTGATGACAGTCATTATTAGAAAATATCAAACCTCGGAATGCTTAATGTCAGTAGAAAACTCTACACATGCTGATTGCGATATGTTAAAATGTTAGCTTTAAGTAATCAATGGATTAACATCTCTTTCGATGTCTCTCTTATGGACACGCATTAAGAAAGAGAAAAGCTGCATATAATACAAAAAGATTGATAAAACGAAGTGCTAGGTTTAAAGGCTAGATTTTTTTTTTTTTTTTTTTTTTTTCTTCATATTTTAACAGGCTGGCAATCCAAATGAGCCATGCAGCTTCACCACAGTATAGCTACCTGTGTGAGTTAATGTGACTAACCTTTGTGGATGCGATGTCTCATAAAATTTGAAGATTTTGTTCCGGTGTCTTTAATTTCCCACATTCTGTGCGTCTAGCCGATCTGACATGTTAATAAACCCAAATGAAAAAACATGGCACAGTGGCTCCCGTCATGTTTCACGGGACTCTTATGACATTTCGCAATACACGGACATACGTAATCAAATTCTAGCCTATTAAAAGAGTCCGAGCTACCACCACAACAGATAGGGAAATATATGTGACGCAGATATTATAAAACCATTCAAATACAACAAAAAATCTTTATTTATTATATCAGTAGTTAAGGGTAAAAGACTTGAGTCGTTTTTAAAATATTCACGAGTCTTTTGTGTCGAGACGAGTCAAGTCTGAAGTCTATTAAAATGTGACTCGAGTCCGAGTCACTAACTCGAGTGCCCATCTCTGGTACAAACTCCATTATATACTCCATCGGTGGACAACAAATGATAGACAAAGCCTAGCCAGGTTTATTGCCCTGTTAAAGACTTCATTCCCATGCAGTGTAAAGGCACTCATTATATCATGGTGGTTATAACCGGGGCAGGACTGGTTTGTGGCCGTGAGCGTAATGGTGCACGTTCCTGTGGCTTAGCTTGAACAGCTTGTTCCTGGTTGCTGTATTTAGCATCATGACGAATCAGTACAATCGTCTTTTAAGTACTGGTGCAGTAGGCGGCGGAAAAGTGCTCTAGCGAAAAGAATGCTTATCCAGTTGACCATGTTTGCCAGGGTATGGAGCAGCCATTAAACATCCACTATGTTTTAAATTGACATGTTCTTTGAGCCCAGATAATGTAAGAGAAACTTTGCAAGTCTTTCTGTAGTATAAAGTGTTGCATTGCATAACAGTCACAAGAGATCATATCTGTTGAAGCCTCTGGGTCAAAAGTGCATTGACATTGAGGTGGAGCAAAACCTGGAAAAAAACCCTTGTCAAACTGCGAGGACTGGACTTCAGTAGAGTTGACGTCATATGGAGGTGGTACCATGGTGAAAGCTGGTGTTTATTGGGATGTGCGTGAGAGTGTGTACATGTGGTCTTCATTAATGGTTGCCTCTAGAGACAAAGGGCTGAATTGGCACATCTTCTTACTGAAGGACAAGCATGTCTGCTGGGTGGATTAGCAACACATTGCAAGAGGTGGAGCAAGAGCAGCAGGAAAAAAGCAGAACTGAAATATGCACAAAGGGATAACTGAGTTTTGGTACTTCCCCCATCCCCCACTTGCTGTTGGTGTGCGTGTTGGTTATGTGAGGAGACATGAAGTGTTTGTAAGACACAAACTAAACACTAGTGGTGGGAGAGAACATAGCAGATGTAAAGCCTTTTCAGTTTCTTTGGATCGTTTGTTTGAAATAGGGGGGGTGGGGGGTCATTTGAGTCATTGCTAAGATTTTCCTAGAAGTCCGTACATGGCATTTTCTTTTCTTTTTCAAATAGTTAAATATTTGGTTTTTCGTGGGTAGTTGACGTAACATGTCCATATCATCGTATATCAAAATCAAGATCTTAGGTTAAAATGTACATCTTGTGACTAGTTAATTGTGACTAGTGATTTAGTGATTTTTATTTTTTTTTCTTCTTTTTTTTGAAGACAAATGTGCATTGATTATAATTCTGACATTACACACTGCATACTTGTACTCACAAGCAAAGATTAAAAAATGTTAAAGTTTGATTTTGTTTATGAATTGGACATCAGTGTTTTACAGAACTGATCCAAATTGTATCAAAATGATACAACTATTATGTAACATCACCAGATGCAAGCGGCATGGCAAAAGCAAATAGAACCCATTATGAATGAAGGAATGAATGAGGCATTTATATAGCACTTATGTACTACTGTACACCCAAAGCGCTTTACAATCATATTGGGGGTCTTTCCTCAACTACCACCAGTGTGCAGCATCCACTTGGATTGGCAGCCACAGAACAACGGTGCCAGTGCGCTCACCACACATACCAGCTAACGTCCGTTTCAAGCCTCGTTTACACTGCACGCGTCTGCGGCGCGTTACGGCTGCGACGCGGCTACCGGAGCTGATCCGCGGCCACTCTAGTCAATGCTCGTGTTTACACCAGCCGCGCCGCGGTGCGTTTTAGAAGCGTCCCAGAAGCGGCTCGCCGCGCCGCTTCGCTAAAGATAGGCGCCTCGCCTATTTTTGACGGACGCCGCGTCCAAGACGCGCAGCTCAAATACAAAATAAAGTCAAAATAATCACCCTGTGTAAACTCCCGCTCATATTTCACATCACTAGGATGCCAGAAATTGACGACAAGAGATTCGAAGTTGAAAATCTTGAAAATGTTTTGTTCTTGTTGTCCATAACTGGACTTTTAAGTGTATTAACTTCGTCTGTAGGCTACAGCAAAATAAAGTATGGCATAGCAATAAACACAATTAAACCGGACAAAATATAACCATTTAGCCATTACAAACACGAAAAAATCAAGGAAAAAAAAACGTCAGACAAGCAAATCTCGTAGTTTCGCGAATCCAGCCGCTTCGCTTCTGAAATGCTTCTGGTGTGAGTTGACATCGCGCAGAGGACGGAACAAAGCCTTGCCGGAGCCGTAATGCGCCGCAGACGCGTGCAGTGTAAACAAGGTTTAAACGAGGCTTCACACTGCAAGCGTAAGCAGCGCGTATTTTTTTCGGCGTGCATGTTAACCAACGGATGCATTCACACCGGCAGCAGGAGCAGCACGTAAGCGTCAAGCAGGAGCGTCGCGTGAGCAGCAGTGAAGCGGGGGTTTCGGCGCCGAGTCTATTTTTGCTGCGCTGCTGACTCTCAATTAAAGTGAAAGCACACTTTTGATGGACAAAATAAATATAATTTCACACAATAAGTGTTCAAAATGCACAGAATAAGCATGTCTAATGTGTTTTAACAAGAATTTGAGTATGACAGAAAAGAAAATTAAGAATCAAAAATATTTATAGAAGATTTACCCGTTTAAACTTGTTTTTAATTATTCAGTTTGGGTTAAAGTATGATGTATTATAAAAAACTAAAGTAAATTAGCCAGAAAATATGATATATAAACATTATTTTAGTTATTACACAGAGCGAGATATAGGCTGCAGCATTCCCAAATCAAACCCGAGTTTGCTGTCTTGTAAACATGTGCACGTGGCAGATGATGTAAAACACAAAAAAAGCTTACCTCATTCATGTGCAGCAATGGATGACACAAGGCTTTTATTTATTTATTTTTATTAATTTATTTACATTTATATGAGAATGTTGTACACCCTCCCCATGTTAACAAACTTTCAAGACTATCAAGTTTATAAATGACCAACTTATAAAAACATTTATAGCTGTCTTTGTAAAGAAATGCTCACTTTATATGTAGCTTCGAGCCACTGCTGTGACGCTGTACAAACGCTTCCAGTGTGAATACTCGCGCGTCTCTGCAGCTGCAGTGACAATGAAGTTACGCTCATGCGCTGCTCACGCGCCGCTTAAGTTTGCAGTGTGAAACGGGCGTAAAGGTGTAGAGGGAAAAGAGTGATAGAGACGATTGAATGGATGGGGATTATTAGAAGGCCATGATTGGTAAGGGCCAATGGAGGGAATTTGGCCAGGACACCGGGATTACACCCCTACTCTTTTACGAGAAGTGCCATGGGATTTTTAATGACCACAGAGAGTCACAACCTCGGTTTAACGCCTCATCCGAAGGACAGTTTTTGTTACAGTATAGTGTCTCCATCGCTATACTGGGGGATTAGGACCCACACAGACCACAGGGTGAGCACCCCCTGCTGGCCTCAATAACACCTCTTCCAGCAGCAACCTAGTTGTTCCAAGGAGGTCTCCCATCCAGATATAATCAGTTATAATCAGTGATGCTACACTGGATGCCATGAAACACAAGTTCCCAACATTAAGCTGATACCCCATTCTATTTCTAACATACTCCAAATACCTGCGCTACTTCTAACACAAAGGACAAAGGGATTTGCAATGGTCGCTTTGTCACGTCCAGTGTGGACAGCCTCTAGCTCAGGGATTGGCAACTTTGGTCCTGGAGGGCCACTGTCCTGCAAAGTTTAGCTCCAACCCTGATTAAAAACTTACCTGCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU285458 lncRNA downstream 26939 559627 ~ 559991 (-) True G251478
TU285449 lncRNA downstream 41224 545455 ~ 545706 (-) True G251469
TU285383 lncRNA downstream 153460 432911 ~ 433470 (-) True G251407
TU285398 lncRNA downstream 175305 406179 ~ 411625 (-) True G251421
TU285396 lncRNA downstream 176317 405725 ~ 410613 (-) True G251420
TU285464 lncRNA upstream 18038 612163 ~ 612566 (-) True G251484
TU285512 lncRNA upstream 35853 629978 ~ 630230 (-) True G251518
TU285526 lncRNA upstream 62507 656632 ~ 656864 (-) True G251528
TU285527 lncRNA upstream 65888 660013 ~ 660240 (-) True G251529
TU285532 lncRNA upstream 75098 669223 ~ 670067 (-) True G251534
CI01000059_00513674_00528840.mRNA mRNA downstream 56981 513469 ~ 529949 (-) True CI01000059_00513674_00528840
CI01000059_00476366_00482307.mRNA mRNA downstream 104623 475994 ~ 482307 (-) True CI01000059_00476366_00482307
CI01000059_00456370_00458895.mRNA mRNA downstream 127490 456284 ~ 459440 (-) True CI01000059_00456370_00458895
CI01000059_00378673_00379901.mRNA mRNA downstream 206906 378673 ~ 380024 (-) False CI01000059_00378673_00379901
CI01000059_00326063_00336542.mRNA mRNA downstream 250388 326037 ~ 336542 (-) True CI01000059_00326063_00336542
CI01000059_00697568_00720771.mRNA mRNA upstream 103443 697568 ~ 720771 (-) True CI01000059_00697568_00720771
CI01000059_00767393_00826328.mRNA mRNA upstream 171608 765733 ~ 826581 (-) True CI01000059_00767393_00826328
CI01000059_00853242_00855219.mRNA mRNA upstream 258629 852754 ~ 855284 (-) True CI01000059_00853242_00855219
CI01000059_00867492_00873239.mRNA mRNA upstream 272540 866665 ~ 873239 (-) True CI01000059_00867492_00873239
CI01000059_00991306_01000173.mRNA mRNA upstream 396906 991031 ~ 1000173 (-) True CI01000059_00991306_01000173
TU285270 other downstream 206793 369931 ~ 373400 (-) True G251313
TU285506 other upstream 657591 1255599 ~ 1255662 (-) True G251512
TU286339 other upstream 1502572 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 2877350 3471475 ~ 3471909 (-) True G253013
TU288177 other upstream 4159413 4753538 ~ 4754082 (-) True G253914
TU288508 other upstream 4643661 5237786 ~ 5238299 (-) True G254203

Expression Profile