RNA id: TU285464


Basic Information

Item Value
RNA id TU285464
length 404
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G251484
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 612163 ~ 612566 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCAATCGCACTCTGTCTTTCGCTTCGGAACCAACCTATGTGTTCTTGCTATTAGTCTGAGAGTGACTTCACAAGCCTTTGAAGAGCTTTTGTTCTACAGTGCTGGCGTTATGGCACCTTACAGCGAGGCCGCGAGCTTTCCCAGAGTGAGCTTCTCGAGCTGTTATACAGCTCCCAACTGCTGTTTTCACAGCATTATTTGCCCCGTTTGGTTTGCGATTTGGGCCGGTTCCTCTGTGTGTGACTCAGGGAGTGAAAAGTGTACCTGCAGTCACATCGCGGCTGTTCCCTGTGTGCTTCGGCACAAAGAACAATAGCTTCTAAAAGAGCTTCACAGACAGACACTGCGTCTTTTTCAAGACGTCATTCTGTCTGTGCGTTTCTGGAGGCGGTCGTTTCCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285369 lncRNA downstream 18038 586930 ~ 594125 (-) True G251393
TU285458 lncRNA downstream 52172 559627 ~ 559991 (-) True G251478
TU285449 lncRNA downstream 66457 545455 ~ 545706 (-) True G251469
TU285383 lncRNA downstream 178693 432911 ~ 433470 (-) True G251407
TU285398 lncRNA downstream 200538 406179 ~ 411625 (-) True G251421
TU285512 lncRNA upstream 17412 629978 ~ 630230 (-) True G251518
TU285526 lncRNA upstream 44066 656632 ~ 656864 (-) True G251528
TU285527 lncRNA upstream 47447 660013 ~ 660240 (-) True G251529
TU285532 lncRNA upstream 56657 669223 ~ 670067 (-) True G251534
TU285535 lncRNA upstream 61642 674208 ~ 674444 (-) True G251537
CI01000059_00570850_00600462.mRNA mRNA downstream 11305 570850 ~ 600858 (-) True CI01000059_00570850_00600462
CI01000059_00513674_00528840.mRNA mRNA downstream 82214 513469 ~ 529949 (-) True CI01000059_00513674_00528840
CI01000059_00476366_00482307.mRNA mRNA downstream 129856 475994 ~ 482307 (-) True CI01000059_00476366_00482307
CI01000059_00456370_00458895.mRNA mRNA downstream 152723 456284 ~ 459440 (-) True CI01000059_00456370_00458895
CI01000059_00378673_00379901.mRNA mRNA downstream 232139 378673 ~ 380024 (-) False CI01000059_00378673_00379901
CI01000059_00697568_00720771.mRNA mRNA upstream 85002 697568 ~ 720771 (-) True CI01000059_00697568_00720771
CI01000059_00767393_00826328.mRNA mRNA upstream 153167 765733 ~ 826581 (-) True CI01000059_00767393_00826328
CI01000059_00853242_00855219.mRNA mRNA upstream 240188 852754 ~ 855284 (-) True CI01000059_00853242_00855219
CI01000059_00867492_00873239.mRNA mRNA upstream 254099 866665 ~ 873239 (-) True CI01000059_00867492_00873239
CI01000059_00991306_01000173.mRNA mRNA upstream 378465 991031 ~ 1000173 (-) True CI01000059_00991306_01000173
TU285270 other downstream 232026 369931 ~ 373400 (-) True G251313
TU285506 other upstream 639150 1255599 ~ 1255662 (-) True G251512
TU286339 other upstream 1484131 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 2858909 3471475 ~ 3471909 (-) True G253013
TU288177 other upstream 4140972 4753538 ~ 4754082 (-) True G253914
TU288508 other upstream 4625220 5237786 ~ 5238299 (-) True G254203

Expression Profile