RNA id: TU285532


Basic Information

Item Value
RNA id TU285532
length 354
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G251534
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 669223 ~ 670067 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTCTGTTTTTCAGAGTTATACCTTTCATGTGGTCGCTGTTGTTGTTGTGTTTTTTTTTTTTTTGCTAGATGTGTATTGTTCTTAATTGTAATTTATTGTTTCAGATGGACTTAAATAGGAGTCTGTGGACTGATTATCTGATTGCTTTAATTATGATCATGATCACCTGGGGATTTGTAGTGCATTTTCTATATTATTATTGAGAGTGAGTGACATTGTTACACTGACGAAGGCGAAGAGCCGAAACGTTTGTCAACTTATCTCCTATGTACCATGATTAAAGTGCTTCAGAGTGCAGACCTTTTTTGTATTCTTATATTGATATATAGGTCTCAGCACTTAATTAGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285527 lncRNA downstream 8983 660013 ~ 660240 (-) True G251529
TU285526 lncRNA downstream 12359 656632 ~ 656864 (-) True G251528
TU285512 lncRNA downstream 38993 629978 ~ 630230 (-) True G251518
TU285464 lncRNA downstream 56657 612163 ~ 612566 (-) True G251484
TU285369 lncRNA downstream 75098 586930 ~ 594125 (-) True G251393
TU285535 lncRNA upstream 4141 674208 ~ 674444 (-) True G251537
TU285538 lncRNA upstream 7448 677515 ~ 677758 (-) True G251540
TU285547 lncRNA upstream 12673 682740 ~ 683017 (-) True G251549
TU285571 lncRNA upstream 216600 886667 ~ 886876 (-) True G251569
TU285505 lncRNA upstream 263423 933490 ~ 937795 (-) True G251511
CI01000059_00570850_00600462.mRNA mRNA downstream 68365 570850 ~ 600858 (-) True CI01000059_00570850_00600462
CI01000059_00513674_00528840.mRNA mRNA downstream 139274 513469 ~ 529949 (-) True CI01000059_00513674_00528840
CI01000059_00476366_00482307.mRNA mRNA downstream 186916 475994 ~ 482307 (-) True CI01000059_00476366_00482307
CI01000059_00456370_00458895.mRNA mRNA downstream 209783 456284 ~ 459440 (-) True CI01000059_00456370_00458895
CI01000059_00378673_00379901.mRNA mRNA downstream 289199 378673 ~ 380024 (-) False CI01000059_00378673_00379901
CI01000059_00697568_00720771.mRNA mRNA upstream 27501 697568 ~ 720771 (-) True CI01000059_00697568_00720771
CI01000059_00767393_00826328.mRNA mRNA upstream 95666 765733 ~ 826581 (-) True CI01000059_00767393_00826328
CI01000059_00853242_00855219.mRNA mRNA upstream 182687 852754 ~ 855284 (-) True CI01000059_00853242_00855219
CI01000059_00867492_00873239.mRNA mRNA upstream 196598 866665 ~ 873239 (-) True CI01000059_00867492_00873239
CI01000059_00991306_01000173.mRNA mRNA upstream 320964 991031 ~ 1000173 (-) True CI01000059_00991306_01000173
TU285270 other downstream 289086 369931 ~ 373400 (-) True G251313
TU285506 other upstream 581649 1255599 ~ 1255662 (-) True G251512
TU286339 other upstream 1426630 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 2801408 3471475 ~ 3471909 (-) True G253013
TU288177 other upstream 4083471 4753538 ~ 4754082 (-) True G253914
TU288508 other upstream 4567719 5237786 ~ 5238299 (-) True G254203

Expression Profile