RNA id: TU285588



Basic Information


Item Value
RNA id TU285588
length 217
lncRNA type intronic
GC content 0.27
exon number 1
gene id G251586
representative True

Chromosome Information


Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 952144 ~ 952360 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTAATTGTTAACTATGGCATTTGTTACAATAAGGATATAATTACAGGTAAGACTATTTTTTCTTTCTTTCTTTTTATAGCATTTGTTATGAAAAATAGCAACACAGTTAGAAACTAAAGCTACAACATGCCACAGTTGTAATATAAATCTTTAGTGAAAAATCTATTCCCTTAACAGATTATCTATTAAAAATTCTACGCCTAGTCAAAATTTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU285585 lncRNA downstream 12284 939642 ~ 939860 (-) True G251583
TU285505 lncRNA downstream 14349 933490 ~ 937795 (-) True G251511
TU285571 lncRNA downstream 65268 886667 ~ 886876 (-) True G251569
TU285547 lncRNA downstream 269127 682740 ~ 683017 (-) True G251549
TU285538 lncRNA downstream 274386 677515 ~ 677758 (-) True G251540
TU285589 lncRNA upstream 3044 955404 ~ 955643 (-) True G251587
TU285591 lncRNA upstream 6864 959224 ~ 959437 (-) True G251589
TU285595 lncRNA upstream 21193 973553 ~ 973909 (-) True G251593
TU285499 lncRNA upstream 163989 1116349 ~ 1116684 (-) True G251505
TU285510 lncRNA upstream 210648 1225656 ~ 1225704 (-) True G251516
CI01000059_00867492_00873239.mRNA mRNA downstream 78905 866665 ~ 873239 (-) True CI01000059_00867492_00873239
CI01000059_00853242_00855219.mRNA mRNA downstream 96860 852754 ~ 855284 (-) True CI01000059_00853242_00855219
CI01000059_00767393_00826328.mRNA mRNA downstream 125563 765733 ~ 826581 (-) True CI01000059_00767393_00826328
CI01000059_00697568_00720771.mRNA mRNA downstream 231373 697568 ~ 720771 (-) True CI01000059_00697568_00720771
CI01000059_00570850_00600462.mRNA mRNA downstream 351286 570850 ~ 600858 (-) True CI01000059_00570850_00600462
CI01000059_00991306_01000173.mRNA mRNA upstream 38671 991031 ~ 1000173 (-) True CI01000059_00991306_01000173
CI01000059_01022397_01031991.mRNA mRNA upstream 69378 1021738 ~ 1032204 (-) True CI01000059_01022397_01031991
CI01000059_01042330_01049708.mRNA mRNA upstream 89890 1042250 ~ 1049927 (-) True CI01000059_01042330_01049708
CI01000059_01062456_01073742.mRNA mRNA upstream 110096 1062456 ~ 1073742 (-) True CI01000059_01062456_01073742
CI01000059_01118201_01130248.mRNA mRNA upstream 165356 1117716 ~ 1130248 (-) True CI01000059_01118201_01130248
TU285270 other downstream 572007 369931 ~ 373400 (-) True G251313
TU285506 other upstream 299356 1255599 ~ 1255662 (-) True G251512
TU286339 other upstream 1144337 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 2519115 3471475 ~ 3471909 (-) True G253013
TU288177 other upstream 3801178 4753538 ~ 4754082 (-) True G253914
TU288508 other upstream 4285426 5237786 ~ 5238299 (-) True G254203

Expression Profile