RNA id: TU285591


Basic Information

Item Value
RNA id TU285591
length 214
lncRNA type intronic
GC content 0.37
exon number 1
gene id G251589
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 959224 ~ 959437 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTATCTCACAGAAGTGAGTACACCCCTCACATTTTTGTAAATATTTTATTATATCTTTTCATGTGACAACACTGAAGAAATGACACTTTTCTACAATGTAAAGTAGTGAGTGTACAGCTTGTATAACAGTGTAAATTTGCTGTCCCCTCAAAATAACTCAACACACAGCCATTAATGTCTAAACCGCTGGCCACAAAAGTGAGTACACCCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285589 lncRNA downstream 3581 955404 ~ 955643 (-) True G251587
TU285588 lncRNA downstream 6864 952144 ~ 952360 (-) True G251586
TU285585 lncRNA downstream 19364 939642 ~ 939860 (-) True G251583
TU285505 lncRNA downstream 21429 933490 ~ 937795 (-) True G251511
TU285571 lncRNA downstream 72348 886667 ~ 886876 (-) True G251569
TU285595 lncRNA upstream 14116 973553 ~ 973909 (-) True G251593
TU285499 lncRNA upstream 156912 1116349 ~ 1116684 (-) True G251505
TU285510 lncRNA upstream 203571 1225656 ~ 1225704 (-) True G251516
TU285504 lncRNA upstream 217082 1176519 ~ 1185331 (-) True G251510
TU285637 lncRNA upstream 308427 1267864 ~ 1268136 (-) True G251631
CI01000059_00867492_00873239.mRNA mRNA downstream 85985 866665 ~ 873239 (-) True CI01000059_00867492_00873239
CI01000059_00853242_00855219.mRNA mRNA downstream 103940 852754 ~ 855284 (-) True CI01000059_00853242_00855219
CI01000059_00767393_00826328.mRNA mRNA downstream 132643 765733 ~ 826581 (-) True CI01000059_00767393_00826328
CI01000059_00697568_00720771.mRNA mRNA downstream 238453 697568 ~ 720771 (-) True CI01000059_00697568_00720771
CI01000059_00570850_00600462.mRNA mRNA downstream 358366 570850 ~ 600858 (-) True CI01000059_00570850_00600462
CI01000059_00991306_01000173.mRNA mRNA upstream 31594 991031 ~ 1000173 (-) True CI01000059_00991306_01000173
CI01000059_01022397_01031991.mRNA mRNA upstream 62301 1021738 ~ 1032204 (-) True CI01000059_01022397_01031991
CI01000059_01042330_01049708.mRNA mRNA upstream 82813 1042250 ~ 1049927 (-) True CI01000059_01042330_01049708
CI01000059_01062456_01073742.mRNA mRNA upstream 103019 1062456 ~ 1073742 (-) True CI01000059_01062456_01073742
CI01000059_01118201_01130248.mRNA mRNA upstream 158279 1117716 ~ 1130248 (-) True CI01000059_01118201_01130248
TU285270 other downstream 579087 369931 ~ 373400 (-) True G251313
TU285506 other upstream 292279 1255599 ~ 1255662 (-) True G251512
TU286339 other upstream 1137260 2099629 ~ 2099667 (-) True G252257
TU287202 other upstream 2512038 3471475 ~ 3471909 (-) True G253013
TU288177 other upstream 3794101 4753538 ~ 4754082 (-) True G253914
TU288508 other upstream 4278349 5237786 ~ 5238299 (-) True G254203

Expression Profile