RNA id: TCONS_00018774


Basic Information

Item Value
RNA id TCONS_00018774
length 691
lncRNA type read_through
GC content 0.40
exon number 5
gene id XLOC_008471
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21672281 ~ 21673670 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTTCAGTTCAAATCAATCAGTGGCGGTTGGAGAGTCAGCTGCTCAACGGAACCTCGGCGTCCGGCTTTACCGAAGGCTACTTCATTTCTGGATACAAATGTCACACCGCAGTCTCGAGAACACAAAAGGAGGAACAGAAATGAAAAGGTCTCAAGCCAAAATACGAGAGGTTGAAAATGCACCTTGTTCAGAGACATCTCCAGCAAAAATGAGAAAGAATTTCAGACCAGCTTCTGGAGACATGTCTTATGGGTTTGAAACTGCTTTGGCAGGCAAGCTAGCCGAGAGGTCAGTCTCCTGTTTTCCAAGTACTTGGAGGTCTTGAGGGAAAGAGCTGCTGTGGATGCTTCACAGCTTGGGGAACTGGAAGGTATTCTTACTGAAGCCAGGAGTTTAGAGGCTAATCTTAAAGAAAAGAAGGAACACCTGAGACGATCTTTGGCTTTGATCTCTGACAAACTACAAGGATAGGTTTTCAGTGGTGTTTTGTTATTTATGTAATGTACACTTTACACACATCAATCCATCAGACATTGTTAAGACATTGATTATACATGTGCATATTATACTTCACAAGTTAATACTTTataaaattagaaaaaatatttaggAATTATATTGAAATAAAGTGTTGTGTTGACATTCACAATCTGTAGTGACTTATTAAACAACTGCATGTATCTACAGgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018944 lncRNA upstream 129363 21520410 ~ 21542918 (+) True XLOC_008470
TCONS_00018942 lncRNA upstream 176385 21446241 ~ 21495896 (+) False XLOC_008467
TCONS_00018941 lncRNA upstream 180273 21446241 ~ 21492008 (+) False XLOC_008467
TCONS_00018938 lncRNA upstream 209125 21446175 ~ 21463156 (+) False XLOC_008467
TCONS_00016958 lncRNA downstream 34113 21707783 ~ 21715665 (+) False XLOC_008472
TCONS_00018945 lncRNA downstream 106928 21780598 ~ 21860417 (+) False XLOC_008474
TCONS_00018946 lncRNA downstream 106987 21780657 ~ 21846956 (+) False XLOC_008474
TCONS_00018947 lncRNA downstream 107030 21780700 ~ 21830017 (+) False XLOC_008474
TCONS_00016965 lncRNA downstream 107045 21780715 ~ 21821632 (+) False XLOC_008474
TCONS_00016951 mRNA upstream 351643 21276735 ~ 21320638 (+) True XLOC_008466
TCONS_00016949 mRNA upstream 396598 21262917 ~ 21275683 (+) False XLOC_008465
TCONS_00016948 mRNA upstream 411361 21254800 ~ 21260920 (+) True XLOC_008464
TCONS_00016947 mRNA upstream 413957 21252617 ~ 21258324 (+) False XLOC_008464
TCONS_00016946 mRNA upstream 414445 21252598 ~ 21257836 (+) False XLOC_008464
TCONS_00016959 mRNA downstream 34230 21707900 ~ 21715436 (+) False XLOC_008472
TCONS_00016961 mRNA downstream 38001 21711671 ~ 21717167 (+) False XLOC_008472
TCONS_00016962 mRNA downstream 38658 21712328 ~ 21719970 (+) True XLOC_008472
TCONS_00016963 mRNA downstream 71010 21744680 ~ 21772839 (+) False XLOC_008473
TCONS_00016967 mRNA downstream 188625 21862295 ~ 21871471 (+) False XLOC_008475
TCONS_00016955 other upstream 224481 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016954 other upstream 234322 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016953 other upstream 234553 21437633 ~ 21437728 (+) True XLOC_008468
TCONS_00016942 other upstream 411089 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016937 other upstream 419999 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016960 other downstream 37990 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016964 other downstream 93854 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016972 other downstream 329412 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016979 other downstream 740454 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00016984 other downstream 1049012 22722682 ~ 22762438 (+) False XLOC_008489