RNA id: TCONS_00016960


Basic Information

Item Value
RNA id TCONS_00016960
length 923
RNA type processed_transcript
GC content 0.45
exon number 6
gene id XLOC_008472
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21707783 ~ 21719970 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaccTGCGGATGTAGTGCAGGAAGTTGATACgttctgtttgttgttttggtgCCACGTTCACGTCTCTcactacatttaaaaatatattgaataaGCGAAAGGTGTATCCATGTCAAAGGTGTCTTTAGGTAAACTTCTACTCCGAAATGTCATCAGACACACAGATGCACATAACAAGAGGAGTCTGAGATGTGGAAGTTGAGGGATCTTGAACGACATACCTCGTCCACTCATTTCCCAAAGCACAGGGGCAGCATGCATTGTGACCGCTATTTGGACGACTCAGAAGGGTCAACGAGAGACCGGCTGGGTGAGCGGAGAGACGATGTATCTGAGAGAGATGAGAGGGAGGCACGATACTGGACACGCAAACTGTATGAGTTTGAAGCCAATGATCCTGACAGGTGGGGCCACAGTGGCTTTAAGGAGCTTTATCCAGAAGAATTTCATACAGACAGAGAGAAAGCTTGCAGTGATAGTAAACATagaaagaaaaaacacaagaaCAAACTGAACGCTGACTTGGAGAAATCTTCCAAGAAGTCATCTAAGAAGAAGAAAAGgaagaaagagaagaagaaaagGAAGACGGCGGCGCCTGGCTCAGAGACCTGCAGTGATGCAGAGGAGACCGTGAGGAGGAAACAGAGGAGAAAGGGGAGTAAAAGCAAACATAAGAAAAAAGAgcacaaaaacaaagacagaacTGAGGACAGCAGCACAGAGGACAGCCGTTCAGACACAAAGCCAAAAACCCACAGGAAAAGAGAGTGTCCTGAAACAGACACACTGACTGAGCCTCAAAGGAAAAAGAGGAAAAACTGGAAAGTAGCGAACGAGGAGAGATCAGAGGAGAGCTCTGATGCTTGACCTTTCAGCTCAACTACACTctgcttttaaaaatgtgcatcaTGTTCATTTT

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0048285 organelle fission biological_process
GO:0007059 chromosome segregation biological_process
GO:0008033 tRNA processing biological_process
GO:0000280 nuclear division biological_process
GO:0072686 mitotic spindle cellular_component
GO:0005819 spindle cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-070410-76 Orthologous to human NKAPD1 (NKAP domain containing 1).

Ensembl:

ensembl_id ENSDART00000052726

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018774 lncRNA upstream 37990 21672281 ~ 21673670 (+) False XLOC_008471
TCONS_00018944 lncRNA upstream 168742 21520410 ~ 21542918 (+) True XLOC_008470
TCONS_00018931 lncRNA upstream 215764 21323056 ~ 21495896 (+) False XLOC_008467
TCONS_00018942 lncRNA upstream 215764 21446241 ~ 21495896 (+) False XLOC_008467
TCONS_00018941 lncRNA upstream 219652 21446241 ~ 21492008 (+) False XLOC_008467
TCONS_00018945 lncRNA downstream 64933 21780598 ~ 21860417 (+) False XLOC_008474
TCONS_00018946 lncRNA downstream 64992 21780657 ~ 21846956 (+) False XLOC_008474
TCONS_00018947 lncRNA downstream 65035 21780700 ~ 21830017 (+) False XLOC_008474
TCONS_00016965 lncRNA downstream 65050 21780715 ~ 21821632 (+) False XLOC_008474
TCONS_00018948 lncRNA downstream 65190 21780855 ~ 21860417 (+) False XLOC_008474
TCONS_00016956 mRNA upstream 38030 21672281 ~ 21673630 (+) False XLOC_008471
TCONS_00016957 mRNA upstream 38208 21672700 ~ 21673452 (+) True XLOC_008471
TCONS_00016951 mRNA upstream 391022 21276735 ~ 21320638 (+) True XLOC_008466
TCONS_00016949 mRNA upstream 435977 21262917 ~ 21275683 (+) False XLOC_008465
TCONS_00016948 mRNA upstream 450740 21254800 ~ 21260920 (+) True XLOC_008464
TCONS_00016963 mRNA downstream 29015 21744680 ~ 21772839 (+) False XLOC_008473
TCONS_00016967 mRNA downstream 146630 21862295 ~ 21871471 (+) False XLOC_008475
TCONS_00016968 mRNA downstream 146708 21862373 ~ 21872824 (+) True XLOC_008475
TCONS_00016969 mRNA downstream 166754 21882419 ~ 21943563 (+) True XLOC_008476
TCONS_00016970 mRNA downstream 231452 21947117 ~ 21981546 (+) False XLOC_008477
TCONS_00016955 other upstream 263860 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016954 other upstream 273701 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016953 other upstream 273932 21437633 ~ 21437728 (+) True XLOC_008468
TCONS_00016942 other upstream 450468 21252579 ~ 21261192 (+) False XLOC_008464
TCONS_00016937 other upstream 459378 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016964 other downstream 51859 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016972 other downstream 287417 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016979 other downstream 698459 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00016984 other downstream 1007017 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other downstream 1007047 22722712 ~ 22733033 (+) False XLOC_008489

Expression Profile

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