RNA id: TCONS_00016971


Basic Information

Item Value
RNA id TCONS_00016971
length 573
lncRNA type retained_intron
GC content 0.36
exon number 3
gene id XLOC_008477
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21947117 ~ 21981546 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAACTTtagctgaactatcccttcaagaaATTAATTATCTGCTGATAAATTATGGATTATTACTCCTTCTGGCTATGTGGGTTTTAAAAAATAGACTAAATGCAAGAATTTTTTCCTGCatatcattattaaatattatgaattaTCTGCATTGGGCAAATTTCCCAAATCAGTGCATTCCTAATAGTTTCTAACAAATAGTATGATTACTCCAAACTACTTAGAAATGTCAAAAAGTACTTGATAATGTTTCACCACTTTACTCAATTGCTGTAATTTTTTTGAGTGGccttttaacaaataaaactctCATTCACAGTgcaatgaaaaatgtattaaagcaTTTATACATATGGGGACATCTCACCTAGCACTCAAGGATTTCACACAATCCAGGATTTGCTATCGAAAAATTTTGGAGATAGAGCCACAGCGGGAGACCATGGTCAAAGCTTATCTGAGACGAGTGGATATGGAAGAGAAAGTGACGCTTCAGGAAAAAGCAGCTTGGGAAGAGCTACAGGAGGGAACAGGGCAGGCCACGAATATAGCAGACTTGCTGAAAAAGCTGG

Function

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-071016-4 Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 45. Orthologous to human TTC12 (tetratricopeptide repeat domain 12).

Ensembl:

ensembl_id ENSDART00000157380

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018945 lncRNA upstream 89814 21780598 ~ 21860417 (+) False XLOC_008474
TCONS_00018948 lncRNA upstream 89814 21780855 ~ 21860417 (+) False XLOC_008474
TCONS_00018946 lncRNA upstream 103275 21780657 ~ 21846956 (+) False XLOC_008474
TCONS_00016966 lncRNA upstream 106925 21781001 ~ 21843306 (+) True XLOC_008474
TCONS_00018947 lncRNA upstream 120214 21780700 ~ 21830017 (+) False XLOC_008474
TCONS_00018949 lncRNA downstream 398650 22351365 ~ 22366522 (+) False XLOC_008483
TCONS_00018950 lncRNA downstream 400310 22353025 ~ 22366522 (+) True XLOC_008483
TCONS_00018951 lncRNA downstream 588629 22541344 ~ 22551028 (+) False XLOC_008488
TCONS_00018952 lncRNA downstream 588649 22541364 ~ 22558972 (+) False XLOC_008488
TCONS_00018953 lncRNA downstream 588649 22541364 ~ 22561137 (+) True XLOC_008488
TCONS_00016969 mRNA upstream 6668 21882419 ~ 21943563 (+) True XLOC_008476
TCONS_00016968 mRNA upstream 77407 21862373 ~ 21872824 (+) True XLOC_008475
TCONS_00016967 mRNA upstream 78760 21862295 ~ 21871471 (+) False XLOC_008475
TCONS_00016963 mRNA upstream 177392 21744680 ~ 21772839 (+) False XLOC_008473
TCONS_00016962 mRNA upstream 230261 21712328 ~ 21719970 (+) True XLOC_008472
TCONS_00016973 mRNA downstream 61314 22014029 ~ 22024954 (+) True XLOC_008479
TCONS_00016974 mRNA downstream 315132 22267847 ~ 22286918 (+) True XLOC_008480
TCONS_00016975 mRNA downstream 359088 22311803 ~ 22325973 (+) True XLOC_008481
TCONS_00016976 mRNA downstream 381063 22333778 ~ 22348626 (+) True XLOC_008482
TCONS_00016977 mRNA downstream 437361 22390076 ~ 22431585 (+) False XLOC_008484
TCONS_00016964 other upstream 180222 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016960 other upstream 234566 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016955 other upstream 502431 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016954 other upstream 512272 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016953 other upstream 512503 21437633 ~ 21437728 (+) True XLOC_008468
TCONS_00016972 other downstream 50367 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016979 other downstream 461409 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00016984 other downstream 769967 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other downstream 769997 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016990 other downstream 1425356 23378071 ~ 23378188 (+) True XLOC_008494

Expression Profile

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