RNA id: TU289512



Basic Information


Item Value
RNA id TU289512
length 1237
RNA type TUCP
GC content 0.49
exon number 5
gene id G255092
representative True

Chromosome Information


Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 6236106 ~ 6242792 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACGGGTGAAGGTTTAGTAGGTGGACTTTATTCAAGCCACGATTAAAAAGGGAGGGAGCAGGGGCGTCACTAAAGCCTGTGACAGCAGGCCTAGGTGAATGGCCTATTATCTTTTATATAACTAGTAGTACAACACAGTCCAGCCTCAGGAGTAAAGCATTCACATGCTTTATGTCCATTCACATAATACACAGGTTTGAACATTTTTTTTTTCTTCAAATAGTAAACCCTGTGAAGTGTTACATGGTCTTCTTGAGCTCGTCATACAGCACCAGGACGAAGGATCCACCCATGCTTCTGAGCACATTGGACCAGGCGCCCTTGAAGAAGGCCTTGGCACCCTCATCACGGGCAGTCTTCCTCCAGCAGTTAAGTGTGCCGCTGTACATTATGTCGGCTCCTTTACGTCCAGACTGCATCATCATACAACGGCGTACTGTGTCAAAGGGATACGATATGAAGCCAGCGACAGCGGTGACGGTGTGAGCGATCATCCAGCTGACCACAATATGAGTGTTCTTCGGGTCGGGCAGCATGCCTTTTGCAGTGTCATAGATGCCGAAGTATGCCGCCCTGTAGATGATGATGCCCTGCACAGACACGTTGAAGCCCTGATACAAGCCCTTCGGACCATCAGACCTGAAGATCTTTACTAAACAGTTTGCCAGGCCTGTGAATTCTCTCTCTGCGCCAGCCTTTCCGACATCAGCAGCCAAACGAGTTCTGGCAAAGTCAAGCGGGTAGACCAAGCACAGAGACGTGGCTCCAGCAGCACCACCAGAGGCCAGGTTACCAGCGAAGTACCTCCAAAACTGGGTACGGCTGTCAACACCATCCAGGAAAATCTTCTTATACTTATCCTTTGTATTGTTTCTCTACTGTGATTTGCTTGCTGGCATGCTGGACCTGAAGGAGCAGTTTGACTCTTTCTATGGGTGCAACAGCAGTCTCGGAGATCGCGGCGGCGATTCCACCTGCCAGAAAGTCCTTGGCGAATGAAATAGCGATCTCACTCATTGTTGCGTGATGCTGCTGGCTGTACGGAAAGGCTGTTCGCCAAAGCCATCGACATGACCGAATTTATAGATGCTCAGTGACTTTTCTAAAGCATCGATCGCGAGATACAGCGGGAATTCAGTTGGTATTGGTCCATCTGTACTTTAGGGAGGAGGAAAGTAAACCCAACCTCTGTTCTGATATATTCGGTGTCTGTGGTATTCGGTTGCACTGCCTTCGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU289506 lncRNA downstream 10478 6225335 ~ 6225628 (-) True G255086
TU289505 lncRNA downstream 10851 6191829 ~ 6225255 (-) True G255085
TU289504 lncRNA downstream 13850 6191829 ~ 6222256 (-) False G255085
TU289499 lncRNA downstream 53759 6182142 ~ 6182347 (-) True G255081
TU289485 lncRNA downstream 277861 5958025 ~ 5958245 (-) True G255067
TU289520 lncRNA upstream 120931 6363723 ~ 6363948 (-) True G255099
TU289521 lncRNA upstream 121206 6363998 ~ 6364212 (-) True G255100
TU289524 lncRNA upstream 157100 6399892 ~ 6400614 (-) True G255103
TU289527 lncRNA upstream 160943 6403735 ~ 6403963 (-) True G255106
TU289529 lncRNA upstream 164957 6407749 ~ 6407990 (-) True G255108
CI01000059_06170785_06173405.mRNA mRNA downstream 62567 6170785 ~ 6173539 (-) True CI01000059_06170785_06173405
CI01000059_06163468_06163941.mRNA mRNA downstream 72165 6163329 ~ 6163941 (-) True CI01000059_06163468_06163941
CI01000059_06136533_06161227.mRNA mRNA downstream 74879 6136224 ~ 6161227 (-) True CI01000059_06136533_06161227
CI01000059_06064465_06072815.mRNA mRNA downstream 163291 6064074 ~ 6072815 (-) True CI01000059_06064465_06072815
CI01000059_06049066_06057648.mRNA mRNA downstream 178394 6049025 ~ 6057712 (-) True CI01000059_06049066_06057648
CI01000059_06248905_06250044.mRNA mRNA upstream 6113 6248905 ~ 6250422 (-) True CI01000059_06248905_06250044
CI01000059_06266617_06275670.mRNA mRNA upstream 23825 6266617 ~ 6275670 (-) True CI01000059_06266617_06275670
CI01000059_06294175_06303446.mRNA mRNA upstream 51189 6293981 ~ 6303446 (-) True CI01000059_06294175_06303446
CI01000059_06368210_06388793.mRNA mRNA upstream 124425 6367217 ~ 6389203 (-) True CI01000059_06368210_06388793
CI01000059_06413479_06420106.mRNA mRNA upstream 170687 6413479 ~ 6420106 (-) True CI01000059_06413479_06420106
TU288508 other downstream 997807 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 1482024 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 2764197 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 4136439 2099629 ~ 2099667 (-) True G252257
TU285506 other downstream 4980444 1255599 ~ 1255662 (-) True G251512
TU291574 other upstream 2738904 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 2738904 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 3211424 9454216 ~ 9599008 (-) True G257014

Expression Profile