RNA id: TU289520


Basic Information

Item Value
RNA id TU289520
length 226
lncRNA type intronic
GC content 0.31
exon number 1
gene id G255099
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 6363723 ~ 6363948 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAAATCTGGGATGCGCGGCCGTAAATTAAAATGATATCGCTGCCAATATCCAGACATAAACATATATGTATGTTAATTAGGCTACTGTTCACTGCTATCATAACACTAAGAAACGATCATTCGTTCGAAGGATTGTATTCTTCAAATTATATATATATATATATAATGCTTATAATGCTTTAACAAAAAACAGCGCATATAAAAAAAATTACTTAGGATTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289506 lncRNA downstream 138095 6225335 ~ 6225628 (-) True G255086
TU289505 lncRNA downstream 138468 6191829 ~ 6225255 (-) True G255085
TU289504 lncRNA downstream 141467 6191829 ~ 6222256 (-) False G255085
TU289499 lncRNA downstream 181376 6182142 ~ 6182347 (-) True G255081
TU289485 lncRNA downstream 405478 5958025 ~ 5958245 (-) True G255067
TU289521 lncRNA upstream 50 6363998 ~ 6364212 (-) True G255100
TU289524 lncRNA upstream 35944 6399892 ~ 6400614 (-) True G255103
TU289527 lncRNA upstream 39787 6403735 ~ 6403963 (-) True G255106
TU289529 lncRNA upstream 43801 6407749 ~ 6407990 (-) True G255108
TU289541 lncRNA upstream 103236 6467184 ~ 6467444 (-) True G255117
CI01000059_06294175_06303446.mRNA mRNA downstream 60277 6293981 ~ 6303446 (-) True CI01000059_06294175_06303446
CI01000059_06266617_06275670.mRNA mRNA downstream 88053 6266617 ~ 6275670 (-) True CI01000059_06266617_06275670
CI01000059_06248905_06250044.mRNA mRNA downstream 113301 6248905 ~ 6250422 (-) True CI01000059_06248905_06250044
CI01000059_06170785_06173405.mRNA mRNA downstream 190184 6170785 ~ 6173539 (-) True CI01000059_06170785_06173405
CI01000059_06163468_06163941.mRNA mRNA downstream 199782 6163329 ~ 6163941 (-) True CI01000059_06163468_06163941
CI01000059_06368210_06388793.mRNA mRNA upstream 3269 6367217 ~ 6389203 (-) True CI01000059_06368210_06388793
CI01000059_06413479_06420106.mRNA mRNA upstream 49531 6413479 ~ 6420106 (-) True CI01000059_06413479_06420106
CI01000059_06430220_06439547.mRNA mRNA upstream 65936 6429884 ~ 6439547 (-) True CI01000059_06430220_06439547
CI01000059_06446066_06457895.mRNA mRNA upstream 81328 6445276 ~ 6457919 (-) True CI01000059_06446066_06457895
CI01000059_06521399_06533677.mRNA mRNA upstream 157211 6521159 ~ 6534556 (-) True CI01000059_06521399_06533677
TU289512 other downstream 120931 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 1125424 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 1609641 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 2891814 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 4264056 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 2617748 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 2617748 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 3090268 9454216 ~ 9599008 (-) True G257014

Expression Profile