RNA id: TU289640


Basic Information

Item Value
RNA id TU289640
length 294
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G255209
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 6696050 ~ 6696343 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGTGCTCCTCAAACCATTCCTGAACCATTTTTGCTTTGTGGCAGGACACATTATCCTGCTGAAAGAGGCCACAGCCACCAGGGAATACCGTTTCCATGAAAGGGTGTACATGGTCTGCAACAATGCTTAGGTAGGTGGTACGTGTCAAAGTAACATCCACATGGATGGCAGGACCCAAGGTTTCCCAGCAGAACATTGCCCAAAGCATCACACTGCCTCCGCCGGCTTGCCTTCTTCCCATAGTGCACCCTGGTGCCATGTGTTTCCCAGGTAAGCAACGCACACACACCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289636 lncRNA downstream 6105 6689711 ~ 6689945 (-) True G255205
TU289634 lncRNA downstream 9899 6685895 ~ 6686151 (-) True G255203
TU289606 lncRNA downstream 116503 6579090 ~ 6579547 (-) True G255176
TU289602 lncRNA downstream 121408 6574431 ~ 6574642 (-) True G255172
TU289598 lncRNA downstream 125939 6569871 ~ 6570111 (-) True G255168
TU289588 lncRNA upstream 101427 6797770 ~ 6801605 (-) True G255158
TU289686 lncRNA upstream 114459 6810802 ~ 6811025 (-) True G255238
TU290255 lncRNA upstream 205147 6901490 ~ 6903467 (-) True G255719
TU290225 lncRNA upstream 235795 6932138 ~ 7046601 (-) True G255691
TU290271 lncRNA upstream 471163 7167506 ~ 7168853 (-) True G255735
CI01000059_06668658_06675615.mRNA mRNA downstream 20435 6666920 ~ 6675615 (-) True CI01000059_06668658_06675615
CI01000059_06656629_06660298.mRNA mRNA downstream 35752 6656387 ~ 6660298 (-) True CI01000059_06656629_06660298
CI01000059_06642665_06650346.mRNA mRNA downstream 45052 6642309 ~ 6650998 (-) True CI01000059_06642665_06650346
CI01000059_06621058_06632392.mRNA mRNA downstream 63141 6619898 ~ 6632909 (-) True CI01000059_06621058_06632392
CI01000059_06606518_06612481.mRNA mRNA downstream 83569 6606491 ~ 6612481 (-) True CI01000059_06606518_06612481
CI01000059_06743553_06768560.mRNA mRNA upstream 46918 6743261 ~ 6768560 (-) True CI01000059_06743553_06768560
CI01000059_06817935_06848280.mRNA mRNA upstream 121547 6817890 ~ 6848280 (-) True CI01000059_06817935_06848280
CI01000059_06914640_06936857.mRNA mRNA upstream 217519 6913862 ~ 6936857 (-) True CI01000059_06914640_06936857
CI01000059_07002729_07060398.mRNA mRNA upstream 306334 7002677 ~ 7060398 (-) True CI01000059_07002729_07060398
CI01000059_07144283_07150061.mRNA mRNA upstream 447503 7143846 ~ 7152701 (-) True CI01000059_07144283_07150061
TU289512 other downstream 453258 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 1457751 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 1941968 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 3224141 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 4596383 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 2285353 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 2285353 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 2757873 9454216 ~ 9599008 (-) True G257014

Expression Profile