Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU290255 |
| length | 1036 |
| lncRNA type | antisense_over |
| GC content | 0.46 |
| exon number | 5 |
| gene id | G255719 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000059 |
| NCBI id | null |
| chromosome length | 10376574 |
| location | 6901490 ~ 6903467 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU289686 | lncRNA | downstream | 90465 | 6810802 ~ 6811025 (-) | True | G255238 |
| TU289588 | lncRNA | downstream | 99885 | 6797770 ~ 6801605 (-) | True | G255158 |
| TU289640 | lncRNA | downstream | 205147 | 6696050 ~ 6696343 (-) | True | G255209 |
| TU289636 | lncRNA | downstream | 211545 | 6689711 ~ 6689945 (-) | True | G255205 |
| TU289634 | lncRNA | downstream | 215339 | 6685895 ~ 6686151 (-) | True | G255203 |
| TU290225 | lncRNA | upstream | 28671 | 6932138 ~ 7046601 (-) | True | G255691 |
| TU290271 | lncRNA | upstream | 264039 | 7167506 ~ 7168853 (-) | True | G255735 |
| TU290276 | lncRNA | upstream | 328321 | 7231788 ~ 7231999 (-) | True | G255740 |
| TU290278 | lncRNA | upstream | 330648 | 7234115 ~ 7234338 (-) | True | G255742 |
| TU290231 | lncRNA | upstream | 370955 | 7274422 ~ 7327314 (-) | True | G255697 |
| CI01000059_06817935_06848280.mRNA | mRNA | downstream | 53210 | 6817890 ~ 6848280 (-) | True | CI01000059_06817935_06848280 |
| CI01000059_06743553_06768560.mRNA | mRNA | downstream | 132930 | 6743261 ~ 6768560 (-) | True | CI01000059_06743553_06768560 |
| CI01000059_06668658_06675615.mRNA | mRNA | downstream | 225875 | 6666920 ~ 6675615 (-) | True | CI01000059_06668658_06675615 |
| CI01000059_06656629_06660298.mRNA | mRNA | downstream | 241192 | 6656387 ~ 6660298 (-) | True | CI01000059_06656629_06660298 |
| CI01000059_06642665_06650346.mRNA | mRNA | downstream | 250492 | 6642309 ~ 6650998 (-) | True | CI01000059_06642665_06650346 |
| CI01000059_06914640_06936857.mRNA | mRNA | upstream | 10395 | 6913862 ~ 6936857 (-) | True | CI01000059_06914640_06936857 |
| CI01000059_07002729_07060398.mRNA | mRNA | upstream | 99210 | 7002677 ~ 7060398 (-) | True | CI01000059_07002729_07060398 |
| CI01000059_07144283_07150061.mRNA | mRNA | upstream | 240379 | 7143846 ~ 7152701 (-) | True | CI01000059_07144283_07150061 |
| CI01000059_07156085_07160233.mRNA | mRNA | upstream | 252249 | 7155716 ~ 7160233 (-) | True | CI01000059_07156085_07160233 |
| CI01000059_07212957_07217869.mRNA | mRNA | upstream | 309490 | 7212957 ~ 7217869 (-) | True | CI01000059_07212957_07217869 |
| TU289512 | other | downstream | 658698 | 6236106 ~ 6242792 (-) | True | G255092 |
| TU288508 | other | downstream | 1663191 | 5237786 ~ 5238299 (-) | True | G254203 |
| TU288177 | other | downstream | 2147408 | 4753538 ~ 4754082 (-) | True | G253914 |
| TU287202 | other | downstream | 3429581 | 3471475 ~ 3471909 (-) | True | G253013 |
| TU286339 | other | downstream | 4801823 | 2099629 ~ 2099667 (-) | True | G252257 |
| TU291574 | other | upstream | 2078229 | 8981696 ~ 8982117 (-) | False | G256890 |
| TU291575 | other | upstream | 2078229 | 8981696 ~ 8982117 (-) | True | G256890 |
| TU291707 | other | upstream | 2550749 | 9454216 ~ 9599008 (-) | True | G257014 |
