RNA id: TCONS_00016981


Basic Information

Item Value
RNA id TCONS_00016981
length 6477
RNA type mRNA
GC content 0.46
exon number 39
gene id XLOC_008487
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22448456 ~ 22538843 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgaACCTCCTGGTCAGCACAGCAGAATACGGATGCAACAGTCTCATTCAACATCAGAAACCGATGCTTCTGATGCATCTGAAAATGACTATAGGATATTGGACTAATAAAAGCTAAACACAAAAGCCCAATGAGCGACACACGGTCTACAGTCAGTGACAGAACCAGTAGCTTTCTCAGCAGAGACCACCCTCCCGACAAGAGGCCCAAAAGTGATAAGCTGCCCGGTACCCCAACACACGAGTTTGACCCAACAGACGTGCTGGTGCAGAAGAGTGGATGTGTAGTGGCTGACAGGAGACCTGAGTCTTGTGGGCTAGTGCAGAGATGCGTGATCATTCAGAAAGATGAGAACGGCTTTGGGCTGACCGTCAGTGGGGACAACCCTGTTTTCGTGCAGCTCGTCAAACAGGATGGCGCTGCCATGCGAGCAGGTGTTCAGACGGGGGACAGGATCATTAAGGTGAACGGGACCTTGGTAACGCAATCAAACCATGTTGAGGTGGTGAAGTTAATCAAATCCGGCTCTTATGTAGCTCTCACAGTATTAGGCCGACCGCCCGGGTTGCCCCAGATCCCCCTCCCTGAGGTGGACGTGGGTCTCGAGTCACCGGATGTTTTCGGGGACCCTTTTATTACATCTCCCAACTCTTACAATGCAGCAGAACGCACCTCCTCTCCTCTTGTATCATGGGAAGAGAACAGTGCTCTACACAACCAAAGAATGGACAGCAGAAGGACTGGTTTAAAGGATCAACAGGACACGCAGGAGAGTCCGTGTCTCAGGAACAGTGAAGATGGCTCATGGGCGGAAGAGGATCAATATAAGAGAGATTTCAGCCCAGAGGCTTTTTGGAGCGGAAATTCAGTGCCATCTGTCCACCGGCGCTTCTACCCAGCTTCTCCAGAGAGTCAGCGGGACTCTAACTGTTCCAGTCCGAAAAGTACCCCCAGAGACAGCTTCAACTCCTGCCCTTCTCCTGAAGTTGACTACGGCTCTGACCTGGATTCTCGATTCCCATCCACCGTAGGGAGCCCACGTTTGGTTTCTGAGATCATTGCTGCTGAAGATGATGACTTTGACTCTGAGCAGGAGCAGGTTAATGGCCAGTGCAGCTGCTTCCAGAGCATCCAGCTGCTCAAGACTCGACCTGCTCATCTTGCTGCTTTTCTGCATCATGTGATCTCTCAGTTTGACCCTGCACCTCTGCTCTGCTATCTGTATGCTGACCTCTACAAACAGACCAACTCCAAAGAAACTCGGCGCATCTTCACGGACTTCTTGACGTTCTTCATAGACCGGGGGGCAaatttGAAAGTCACTGTGCCTGAATCCATCTCGTCTGAACTCGAGCGGAGGAGACCAGAATTGATTCCTGAGGAATTACACAGGCAGTACATACAGACAATGCAGGAAACTCTCTTTCCTGATGTACAGAGGAACCTGGAAGACTTCAGGCAGAAGCGTAGTATGGGCTTGACCCTGGCGGATACAGAGCTGTCTCGTCTGGACTCTGAACAGCTGGCTGTAGACAGAGAGAGAGCCTGTGCTGAAAGCATCCTCTCAAAGATAGATGACGTTCTGTTGACTTCACAACCCACAGAAGAGGAGAAATGCTCCACTATACAGTATGTGATCTTCATGTACATGAAGCATCTGGGAGTTCGGGCGAAAGAACAACGAAACCTGGAATCCAAACGAGTTCGAATTAATTTCCTTCCTTCCAAACTAAGGaaaagcaaaacagaaaagGATGGGGAGGAGAAACTAAAAAAGTCTCGCTTCCCCATCCGGGTGCCCCCGCGGTGGCCCGGTCGCCTCGATTCAGTACCATCTGGTAGGGTCGGGGACAGCATCAAGCAAAGACCTCAGAAGCAGATGTCTCAGCCGGCACTGGGCGGCTCAGAGCTGATCGATGCCGGACGTCTGAGGGGCAGTCAGTCAAGTGAGGGCTCAGACCTGCTCCACAGCCCAGGACTGATCACCTCTTCCCCCTTTAGTGCCCCCTACAGCTCACCGTCAGACCCCTCTGGCAGGGACTCTGAGTTCAATATGAGCCCGTCTGCGGTGGTTCCTCGgctcagtgatgggctgcagtCTGGAGATCCACTGGACAGCATTTACCCACCCTGTGACTACATCCCATACAACGTGGACCAGCTGGATGAAGACAGAGATGGAGACAGacctccTGATGTGGGCACACCTAAACCGAGCAGAAGGTTTGAGGATCTGCAGAGTGAGGATGATCAGGGGAGTGATGTTTACTCTGATGTAGATCCTCCAAACTGGCAGCAGCTGGTCGGGCGTGATGTTTTAGCAGGCCTGACGCCCCACGAGATCAAGAGACAAGAAGTCATTAATGAGCTGTTCTACACGGAGCGAGCTCACGTACGCATGTTGAAGGTCCTAGACAAGGTCTTCTACCAGAAACTCAACCGAGACAACATACTGCCCCCTGCTGACATCAAGTACATATTCACCAACCTGGAGGAAATCATCCAACTCCAcgTGAGAATAGTGGATCAAATGACAGCAATTTGCAAGAAGAACGAGACGTCTGTAATCGACCACATAGGAGACGAGTTGTTGTCTTGGTTCAGCAGTGGAGAGGAGGAGAAGATCAAGCAAGCAGTGGGCACTTTCTGCAGTAACCAGCCCTTCGCCCTGGAGCTCATCAAATCCCGACAGAAGAAGGACCAACGTTTCTCCTCCTTCATGCAGGAGGCTGAAAGCAATCGACTGTGTCGGCGTCTACAGCTAAAGGACATCATCCCTGCAGAGATGCAGAGGTTCACCAAATACCCATTATTAATGGACAACATTGCCAAATACACAGATGAGTCAGAGGAAAAAGACAAAGTGAGACGAGCAGCAGAATGCTGTCGACAGATTCTCAACCACGTCAATCAGTCTGTGAAGGAGTCCGAGAATAAACAGAGACTGGAAGACTACCAGAGACGGCTGGACCTCTCTTCCCTCAAGCAGAGCGAGAACCCAATGATCTCAGAGTTCAAGAACCTGGATCTCACTAAACGAAAGATGGTCCACGAGGGTCCTCTCTCCTGGAAGATAAATAAAGACAAAACAATTGagTTGTATACGTTACTCCTGGAAGACATACTGGTGCTGCTGCAGAAGCAGGACGAGCGTCTCATTCTCAGGTGTCACAGTAAGAACCTGGCAGGAACAGCTGAAACCAAACACATCTTCAGCCCTATCATCAAGCTCAGCACTGTGCTGGTGCGCTCTGTGGCCACAGATAATAGATCATTCTTTGTGATCTCCATGTCCAAAAACGGAGCTCAGATTTATGAGCTGATGGCCCAGACGGTGTCTGAGCAGAGGATGTGGCAACGGCAGATCACTCAGAGGGCAGAGGTTATGAACACCAAACCTCACAGTGTCATTCCTTTGCCTCAACACGATGGCGACAGAGACGGTGTGGAGTTAAGCAAGTTCAGCAAAGGCTCTGATCGGATCTCCACAGGAAGCATCCAGTCCGCAGAGAAAGACGGTGAATTTTCGCCCTCAGCAGCCCTGCGGGACTGTGTGCCCGATACCAACCCTGGGGAAGAGGACCAGGTCGCGAGAGCTGGCAGAGACGCTTCCTATCAGGACTCTGAACTTTTGAACGGCAGGGAAACAGACTCTCTATCTTGTTCATCTAAAGCTGACGAGGCCCTGAAAACATTGGCAGCGCTAAAGCAGGTGCTGCTGACTCAGCTGATGGCTCAGGATGAGGGTGAGCGATTGGGCCGATCGGCCGGCAGTCGTCTGCTCAGGACCACCTCTTTACGCACACCAGTGGAGCACAACTCCAACCGCACCCCTAGTCGAGCTCAGGACTACACCTCTGGCGACACAGGCTTCTATGAGTGCCCGGAGGATTACGCAGCGTACCTGGTTCTGGAGGGCTTCGGTGGCTCGGGCGAGAGCAGCACTGATGATGATTTTCAGGTTGGGAGAAAGGAGCCTGGTTTGGCCCACAGCTGCGCTGCTGACTCTGGGATCAGCCTGAAGTTCTCCTCGCCCTCCTCTGGCAGCACGTCCCGTCTCAGCAGACAGGTGCTCTCACACCTGCGCTGCCTGCAGGCCAACCTCAACCACCTCAAGgagATGGAAACTAAGTATTATAATCTACTTCGCCAAAGGCCTGTCGGATCAGCAGCAGAAGCAGACGAGAGCAGAGAGAAGAAATAAGAGTGGCAGAAGTCGCCGGCTCCTGTGATGACGGGGGCATCTCTTCAGTCTCCGCACAAGCCTGTCTGCCTCACTGCTGAACACCTCCATCcaaaaaaaaagaggaggagaataTTCTAACAAGCTTTCTTCTCTTGCTTCTGTCAGCACTCGTCAATTAGGCAAGACGGACTGTCTCTTCTCTGCCTTTACCTGTCCCGACTACATGTCCTCATTCCAGCAAACGTGGGCAGCCCAGTCTGCTAGTCCTCGCTAGACAATGGAGAACGATACCAAAATGTACAAAGCTGTGTGTCTTcagaatatatatacagtatgtaacaAACAGTCGAGAacggatttttaaaaaaaactaatgtattgtttttttcctctttttaaatcctgagatgtatttatttttcttttagtgtttttTCCATGTTTCTTGCATGCTTTTGGCTGTTGAAACTCTTTAAGCTGTCTGTAGCTGTAGGCATCAGGATGACTGAACAGGGCGAGTGCTTCCGAATTCAGACTTTTCCCCTTTTTTTCTATGGAAGGCCAAATCTGTGCAGTACATAAAGAGAGTTTTTTCTTTTTGCTGAAGGCCTCGCTCTGTTCCTCCAGCCAGCTGACATTCCTCCCAGAGCCCTGGACTCATTGGTTTTGCCCTCGAGACCCTCCTGGATGGAGCTCAGGCTCTCCTGGTCTGCAGTGAAATTAtgatgactgtaaaaaaaaaaagagagagagagagagagaattaccATCAAAATAGCAGGTGATGCAAAACTtggaaataaaaatgcaatgATAAAGCTTCTGTGCTGATCAGTTTGGCTTGGTTTTTGGCAGTTCTTTTAAATTGAGGCTCTGAAGGAGTATAATGAGAACATGTGCCGGCATGTTCATGACCCAGAGTGGTAATTCAAGTAGCTTGTCAATCAAAACGGCATGTTGTTTGAAACCATAAGCCGTAAGGTAGGGTTTTTTACAGAAGCTCTATAGAGAAACCTCAGTGCTCACCAAACATGATAAATGTTACTAGATAGCTCTTAAAGTAACAGGTTTTTCTTTTGAAGGAATAGTTTAAACCAAAACTGGAAATGTTTCTATTTCTAATAATGTTCTTGACAAGCAAAACAATacttttactgcttgttcaagctgcctttttaaattgagctgaaacaacacaattattaaatctttttttgggaaaacttcattgtttcatgttcagtctactcacatttgtaaaaacaattaagctaacttaatctatttttgttgagacaacatgagggaattgtgttgaacccagcatcttttttttacagtgaacaaaaaAACTCTATAATTCTATAATTGGATCTCAACATAAcatctagggctgcacgatattggaaaaaatggacattaagatattttgtttttctgcgatacGTATTGCAGTATGAATGCAATTTCATCAGACGGTTTAATAGCACTATTTTGGAAAGAAATCCTGAATTTAGACTGACTATGGTGATTTTGTATtggaataagaaaaaaaaaattgcaagcaaaaatatatacaatagagcaaagaaaaaaagtcaaacaaacagCGTTATGGTTTTCTGGCATGTCAAACAGTATCCAGGTACAGAAATCGAATGATCAAATGTCATGTACAATAATACTATAACAATGAATAGACTTAactgtattaatatttaataacaattattgtttaataagttacaaatgtacttttttgtacCCAAATGCTTCAATctctcttgaaatgcctttaaaaaaacatgcaaatgataaactttcactctgttTTGGGTAAACTTCATAGTTACTCCACAAATCTCTTGCATTCGCAACTGTAGTGCTGATCAAATTTAATCCAAAGCAGCATTggatatcctgtgatgtgactattgtgaatgcacatattgcgatatcaatgctgaaataatatattgtaaagCCCTATGCAAATTTAGTCTAAAATAGAATTTGTCCTCGGAAGCATAAGTCCAAGGCACtggaaaagtgaaaaaaatatatagagctTTTATTAACATGACTATTCTATGAAACAGCACctactgtatgtgttttttgtGATTGATTTCAcactttcgttttttttttttaaagacattgcaTACATTTATTTCCACCACACAATTGCCTTCCATAAGATTGTGAACTAACGTGTCAATGTATTGCAGAGCTATACAAGAGCTTTATattcatgtatgtttttttatgtttacatttcttTAAAGTGAG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121017-3 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoplasm and membrane. Orthologous to human ARHGEF12 (Rho guanine nucleotide exchange factor 12).

Ensembl:

ensembl_id ENSDART00000040542

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018949 lncRNA upstream 81934 22351365 ~ 22366522 (+) False XLOC_008483
TCONS_00018950 lncRNA upstream 81934 22353025 ~ 22366522 (+) True XLOC_008483
TCONS_00016971 lncRNA upstream 495741 21950231 ~ 21952715 (+) True XLOC_008477
TCONS_00018948 lncRNA upstream 588039 21780855 ~ 21860417 (+) False XLOC_008474
TCONS_00018951 lncRNA downstream 2501 22541344 ~ 22551028 (+) False XLOC_008488
TCONS_00018952 lncRNA downstream 2521 22541364 ~ 22558972 (+) False XLOC_008488
TCONS_00018953 lncRNA downstream 2521 22541364 ~ 22561137 (+) True XLOC_008488
TCONS_00018954 lncRNA downstream 668316 23207159 ~ 23207464 (+) True XLOC_008490
TCONS_00018955 lncRNA downstream 727815 23266658 ~ 23268377 (+) True XLOC_008492
TCONS_00016980 mRNA upstream 3710 22435460 ~ 22444746 (+) True XLOC_008486
TCONS_00016977 mRNA upstream 16871 22390076 ~ 22431585 (+) False XLOC_008484
TCONS_00016978 mRNA upstream 16871 22394074 ~ 22431585 (+) True XLOC_008484
TCONS_00016976 mRNA upstream 99830 22333778 ~ 22348626 (+) True XLOC_008482
TCONS_00016975 mRNA upstream 122483 22311803 ~ 22325973 (+) True XLOC_008481
TCONS_00016985 mRNA downstream 183841 22722684 ~ 23188894 (+) False XLOC_008489
TCONS_00016987 mRNA downstream 328331 22867174 ~ 23187582 (+) True XLOC_008489
TCONS_00016988 mRNA downstream 669199 23208042 ~ 23265405 (+) True XLOC_008491
TCONS_00016989 mRNA downstream 817757 23356600 ~ 23358807 (+) True XLOC_008493
TCONS_00016991 mRNA downstream 904822 23443665 ~ 23451449 (+) False XLOC_008495
TCONS_00016979 other upstream 34203 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00016972 other upstream 445260 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016964 other upstream 678447 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016960 other upstream 732791 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016955 other upstream 1000656 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016984 other downstream 183839 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other downstream 183869 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016990 other downstream 839228 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016993 other downstream 907346 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00017027 other downstream 2024925 24563768 ~ 24569062 (+) False XLOC_008513

Expression Profile

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