RNA id: TU291231


Basic Information

Item Value
RNA id TU291231
length 507
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G256584
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8128451 ~ 8164532 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGCGTCCATACGGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTCGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGTTGCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACTGAAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAGAAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAATGGCATGTTTTTGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTCACAGACACATTCTGGGGACACCAGAGACTTATAGTACATCTTGTAAAAAGGGGCATAATAGGTCCCCTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290561 lncRNA downstream 12971 8115278 ~ 8115480 (-) True G255994
TU290537 lncRNA downstream 47868 8080377 ~ 8080583 (-) True G255970
TU290534 lncRNA downstream 51651 8076569 ~ 8076800 (-) True G255967
TU290531 lncRNA downstream 56652 8071189 ~ 8071799 (-) True G255964
TU290498 lncRNA downstream 60985 8005107 ~ 8067466 (-) True G255937
TU291217 lncRNA upstream 17124 8181656 ~ 8183011 (-) True G256571
TU291284 lncRNA upstream 69689 8234221 ~ 8234508 (-) True G256633
TU291287 lncRNA upstream 84990 8249522 ~ 8250791 (-) True G256636
TU291298 lncRNA upstream 96933 8261465 ~ 8261681 (-) True G256643
TU291279 lncRNA upstream 117578 8282110 ~ 8283205 (-) True G256628
CI01000059_08107732_08108249.mRNA mRNA downstream 19894 8107448 ~ 8108557 (-) True CI01000059_08107732_08108249
CI01000059_08031635_08038209.mRNA mRNA downstream 90242 8030188 ~ 8038209 (-) True CI01000059_08031635_08038209
CI01000059_07977090_07983037.mRNA mRNA downstream 145414 7976964 ~ 7983037 (-) True CI01000059_07977090_07983037
CI01000059_07941129_07955904.mRNA mRNA downstream 172257 7940484 ~ 7956194 (-) True CI01000059_07941129_07955904
CI01000059_07872877_07881890.mRNA mRNA downstream 245397 7872011 ~ 7883054 (-) False CI01000059_07872877_07881890
CI01000059_08188428_08219512.mRNA mRNA upstream 23522 8188054 ~ 8219512 (-) True CI01000059_08188428_08219512
CI01000059_08221332_08227552.mRNA mRNA upstream 56738 8221270 ~ 8227552 (-) True CI01000059_08221332_08227552
CI01000059_08251075_08251545.mRNA mRNA upstream 86422 8250954 ~ 8251545 (-) True CI01000059_08251075_08251545
CI01000059_08263161_08266360.mRNA mRNA upstream 98465 8262997 ~ 8266360 (-) True CI01000059_08263161_08266360
CI01000059_08286190_08290114.mRNA mRNA upstream 121568 8286100 ~ 8290114 (-) True CI01000059_08286190_08290114
TU289512 other downstream 1885659 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 2890152 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 3374369 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 4656542 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 6028784 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 817164 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 817164 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 1289684 9454216 ~ 9599008 (-) True G257014

Expression Profile