RNA id: TU291217


Basic Information

Item Value
RNA id TU291217
length 820
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G256571
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8181656 ~ 8183011 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAATAGGAGGCCAACCCTATGTTACTACAATGTGCTGGTGCTGAGATATGGCTTATTCATGCACATATGGTTGCTAGGGTGTTCTGGATAGTTGCTAAGGTGTTGCTAGGTGTGACAGATGGTTGCTAAGGTGTTGCTAGTTAATTCCTGCAAGTACTGTAAATTACCCTATTTAAGTCAATAGAGACCGACCCTATGTTACCACAATGTGCTGGTGCTGAGATATGGCTTATTCATGCAGATATGGTTGCTAGGGTGTTGTGGGTGGTTGCTAGGTGTCAGAGATAGTCAATAAGGCGTTGCTAGGTAATTCCTATGTTATCAGTGCTGTAAATTGCCCTGTTAAAGTCAATAGGAGGCCAACCCTATGTTACCTACAATGTGCTAATGCTGAGATATGGCTTATTCATGCACATATGGTTGCTAGGGTGTTCTGGATAGTTGCTAAGGTGTTGCTAGGTGTGACAGATGGTTGCTAAGGCGTGGCGTGTTAATTCGTATGTTATGAGTACTGTAAATTGCCCTGTTTAAGTCAATAGAGGCCGACCCTATGTTACCACAATGTGCTGGTGCTGAGATGTAGCTTATTCATGCAGATATACTTCAGATATGGTTGCTAGGCAGTGACTAGGGTGTTGTGTGTGGTTGCTAGGGCATTGGTAGTGTGATTTCAGTGATCACTAGGTAGTTCATATGTTATGCAAGTACAATAGAGGCCAACCCTATGTTACTAGGATGTTGTGGTGCTGAGATATGGCATATTCATGCTGGACAGAAGAAGGCTTGTACTCACAGTATTGGGGTTGGTGAGATTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291231 lncRNA downstream 17124 8128451 ~ 8164532 (-) True G256584
TU290561 lncRNA downstream 66176 8115278 ~ 8115480 (-) True G255994
TU290537 lncRNA downstream 101073 8080377 ~ 8080583 (-) True G255970
TU290534 lncRNA downstream 104856 8076569 ~ 8076800 (-) True G255967
TU290531 lncRNA downstream 109857 8071189 ~ 8071799 (-) True G255964
TU291284 lncRNA upstream 51210 8234221 ~ 8234508 (-) True G256633
TU291287 lncRNA upstream 66511 8249522 ~ 8250791 (-) True G256636
TU291298 lncRNA upstream 78454 8261465 ~ 8261681 (-) True G256643
TU291279 lncRNA upstream 99099 8282110 ~ 8283205 (-) True G256628
TU291277 lncRNA upstream 140658 8323669 ~ 8324719 (-) True G256626
CI01000059_08107732_08108249.mRNA mRNA downstream 73099 8107448 ~ 8108557 (-) True CI01000059_08107732_08108249
CI01000059_08031635_08038209.mRNA mRNA downstream 143447 8030188 ~ 8038209 (-) True CI01000059_08031635_08038209
CI01000059_07977090_07983037.mRNA mRNA downstream 198619 7976964 ~ 7983037 (-) True CI01000059_07977090_07983037
CI01000059_07941129_07955904.mRNA mRNA downstream 225462 7940484 ~ 7956194 (-) True CI01000059_07941129_07955904
CI01000059_07872877_07881890.mRNA mRNA downstream 298602 7872011 ~ 7883054 (-) False CI01000059_07872877_07881890
CI01000059_08188428_08219512.mRNA mRNA upstream 5043 8188054 ~ 8219512 (-) True CI01000059_08188428_08219512
CI01000059_08221332_08227552.mRNA mRNA upstream 38259 8221270 ~ 8227552 (-) True CI01000059_08221332_08227552
CI01000059_08251075_08251545.mRNA mRNA upstream 67943 8250954 ~ 8251545 (-) True CI01000059_08251075_08251545
CI01000059_08263161_08266360.mRNA mRNA upstream 79986 8262997 ~ 8266360 (-) True CI01000059_08263161_08266360
CI01000059_08286190_08290114.mRNA mRNA upstream 103089 8286100 ~ 8290114 (-) True CI01000059_08286190_08290114
TU289512 other downstream 1938864 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 2943357 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 3427574 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 4709747 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 6081989 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 798685 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 798685 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 1271205 9454216 ~ 9599008 (-) True G257014

Expression Profile