RNA id: TU291279


Basic Information

Item Value
RNA id TU291279
length 1096
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G256628
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8282110 ~ 8283205 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAGTGTTCAAATTTCCCACTGTATTAAAATCACATTTGTACACTCAAGAGTTCACACACAAAATAGAGTCTTCTAGGAGAGAGACGGTGCAACAAGATATAGAAAAATACAAAAACAATCTACAAGGAGTAAACGGCAACAACCTCTAAAACCACGAAACACAATCATAGGATTCAAACAAACTGAACCCTGAACAACCACAGTGTTGATCAATCTGTTCACAAGTGTCTTTCACTCATGTTCAGTATATCACAGCAGAGAATCAAGGGAGATGATGAACTTGGACCAATTATGATACCAAAAACAAAACAAAACTTGTGGAAAACAAAGGGAACATTGTTCAGAACATTAATTCAATGATTCATCCTGAAATGTGTTCAGGTCAATGAGAAGGTTGAGTGATATCAGCTGAATCTGATGTTTGTTGTGCTACTCATCTTGGACTAAAGGCCCGTTCACAATAACTGTGAAGTTTAATAATCGTTCTAACTCTAAGAGAACAGCAGAGTCCACGCCACAATTATAATGATAGCAACACAGAGGAATGATAAAAACATTGACAGCCAATCAGAATCCATCCTATGGAAGCCCATTTCCGCCACACAAGAAAAAAATAATGACATCAAAAGTCAAAATTATGACATACCAAGTCATAATTATGATAAAACAGTTGAAATTATGACATAGTAAGTCATAATTATGCGATAAAAAAGTCAAAATTATTACTTATACCCCCAGTTGCACAGACTAAAATGTGTGTTTGAGCTGTTTAAACTGAAAGCAACTTGCACTGAAAGATCTTAAAATATGTCAGTGCAACTGTTTTGTCTCAAGATGGACACCAGTGATGATTTTTTCTAGTGTACATTTATAAAAGCTACTTACATATCCTAATTGAACTAAGGCCTAATCTTGGCTTAGGCTAAGCCCTGTCTGTGAAACCGGCCCAAAAAGTCATGACATACTAAGTCTTAATTATGAGATAGTCAAATTTATGACAAAAATTTGAAATTATGATATACAAAGTCATAATTATGAGATAAAAAAGTTGAAATTATGACATACTAGGTCAAAATCTTGAGATGAAAAGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291298 lncRNA downstream 20429 8261465 ~ 8261681 (-) True G256643
TU291287 lncRNA downstream 31319 8249522 ~ 8250791 (-) True G256636
TU291284 lncRNA downstream 47602 8234221 ~ 8234508 (-) True G256633
TU291217 lncRNA downstream 99099 8181656 ~ 8183011 (-) True G256571
TU291231 lncRNA downstream 117578 8128451 ~ 8164532 (-) True G256584
TU291277 lncRNA upstream 40464 8323669 ~ 8324719 (-) True G256626
TU291327 lncRNA upstream 199319 8482524 ~ 8482767 (-) True G256669
TU291331 lncRNA upstream 200240 8522131 ~ 8522285 (-) True G256670
TU291366 lncRNA upstream 264690 8547895 ~ 8548638 (-) True G256700
TU291375 lncRNA upstream 298834 8582039 ~ 8582374 (-) True G256709
CI01000059_08263161_08266360.mRNA mRNA downstream 15750 8262997 ~ 8266360 (-) True CI01000059_08263161_08266360
CI01000059_08251075_08251545.mRNA mRNA downstream 30565 8250954 ~ 8251545 (-) True CI01000059_08251075_08251545
CI01000059_08221332_08227552.mRNA mRNA downstream 54558 8221270 ~ 8227552 (-) True CI01000059_08221332_08227552
CI01000059_08188428_08219512.mRNA mRNA downstream 62598 8188054 ~ 8219512 (-) True CI01000059_08188428_08219512
CI01000059_08107732_08108249.mRNA mRNA downstream 173553 8107448 ~ 8108557 (-) True CI01000059_08107732_08108249
CI01000059_08286190_08290114.mRNA mRNA upstream 2895 8286100 ~ 8290114 (-) True CI01000059_08286190_08290114
CI01000059_08334902_08338268.mRNA mRNA upstream 51538 8334743 ~ 8338268 (-) True CI01000059_08334902_08338268
CI01000059_08354408_08356482.mRNA mRNA upstream 69403 8352608 ~ 8356552 (-) True CI01000059_08354408_08356482
CI01000059_08360308_08360726.mRNA mRNA upstream 76560 8359765 ~ 8360807 (-) True CI01000059_08360308_08360726
CI01000059_08382830_08423907.mRNA mRNA upstream 99167 8382372 ~ 8424724 (-) True CI01000059_08382830_08423907
TU289512 other downstream 2039318 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 3043811 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 3528028 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 4810201 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 6182443 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 698491 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 698491 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 1171011 9454216 ~ 9599008 (-) True G257014

Expression Profile