RNA id: TU291361



Basic Information


Item Value
RNA id TU291361
length 2720
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G256696
representative False

Chromosome Information


Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8640074 ~ 8710516 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAAAATTTCTTTTATTTAGTTTTATTTAATAACTTTCAGGAGGGTTGACACATTTTTGCAACACAATATTTTATCCAAAATCTTATTTTCCTGAATAATTTGACATGCTTCTTTGGTAATTGATCAAGCAGACATGCTAGAACATTATTTTCATGATTTAATTTAAAGTATGTCAAATTGGATTAAAATAATTCTTCAAAATGGGGTGGAACTGAACAAATATGACTTCAGATAATGACCATTCTGTAAGTGCTTTAAATGGAAATGGACAGAACATGCAGTACAAATATTATTTATAAAAGTTAATATAAAAATGCAGTATAAAAGTTTACATACAGACACAAACAATTATACGGACATAAAATAATACCACAGATATTGCACAAATGCTCAAGTGGCATTTTCCTGCTTTTCACATCCACCTGATGTTAAAGGAACAGTTCACAGCTGTACGCTTCATATATACTTCAGCAACGCACTGAAAACGATTCAAATTTGGCTCTGTTCCTCAATACAAAACTACCACGTGATTTCAGAAGACATGGGATGTGGTGCATGAATACTTTTATGCTCTTTGAAGCTTGACAGCATCTGGTCACTGTCTGCAAAAGAGCAGCATGAACATTGTGCTAAACGTCTCCTTTCAAAGAAAGTCATACAGGCTTGGAATAACATGAGGGTTGATAATTGATGATGATTTTGGTGAACCACCCTTTAATTTTTGACCAACTTTATGTCTCTTGTGCTCTTCCCACATACACAGACAAATAAAATTAATCTACAAATACATGAATAAATTCACATGAAATGTGTAGTATACAGTATACTGTTGTAAAATAAGCTACATCACAAGAGTTTTTGGTTTTGTTGGGCTCATTTTCACTGGACATGTTTTTTCTTCAAATATTCAAAATATAAAAACCTCAGGCCAGCTGCTGAAGTCATGAATTTACTATATACTGAATCTACAGCATAAACATATTATAGTCTCACACACACAAAAACAAACATATTTGAAGTTGCTTAATTACTATTGCTAATTACAACATTTCCATGACAAAATTACAAAATTTAATGAACATACACTCTAAAAAATGCTGGGTTAAAAACAACCCAAGTTGGGTTGAATATGGACAAACCCAGGGATTAGATTGTTTTAACCCAATGGTTGGGTTAAATGTCTGCCCAACGTGTCGGGAAGTCTTATTTAACCCAACTATTGTTTAAAAATTACTATATTTCTTGCTATAAATGAACATTTATTAATATGTTTAATAAATGAACATTTATTAATATGTTTAATGAATAATAATTAAACAATAAACATTTATTAAATTGCTCATTAATAAATGTTCACCTTTTGATTATTATTGTTGCCTCTAGTAATTATGTGTCTGATTTTTAATTTCCAACCTATTTTGGTTTCATTTTAAGCCAGTCATATAGTCATTTTTAAACAATAGTTGAGTTAAATAAAACTGCCCAGCAGGTTGGGCAAACATTTAGCCCAACCGCTGGGTTTGTCCATTTTCAACACAACTTGTGTTGTTTTTAACCCAGCATTTTTTAGAGTATACCATTTAATCTTTGGTAAGTGTTTGATTTGAGAGGGGAAAAAAAAACAAAAAAAACATACAAATCTCATGAAAACATGTTGGGTCATATTTCACCCCATAATCAAAAGAAGAAAAAAAAAAAAAACATTTTGCATAAAGAAAATGGATTATTATAATTTATTATTACTTCAACAGCAATAATATTTTATTTAAATTAACAATTTTCAATTTAGCAAATTAAAAGCATTTAAACAAATACTACTATAATCCAAAAAAATGAGATTGCAATGCAATTTATTTTGTCTTTGTATTGATTTGAGGGTTAAATATGACGTGTTTTGGCAGATTTCATGAGATTCAGCCACTGTTTCTAGTTTTGGACAAGTAAATATTTAACAAATCTACATCCACAGAGACTCCGAGGTAGCCAGTCTGTCCCATGCGAGACAGCCTTTTCAGTAACATAAAAATGCTTCCTTTTATTATTGGTGTCCACTGTTTTGATTTTTTTAATGTTTCATCATATCACTCCACAGCTGAGTGTTTGGATACGAGGCGGTCTGACGTTTGTTTGGTCGTCTCTTTGAGCTACATTTAGCCGTGTCTGAAAGCGAACTGATGCGTCAGACCTCTGTTTGTCTGTGAAATCTTATTTCGCCTCCATCAGAGAGGCACCGGCGCAAGAATGCGATGAATTTCCTGTTAGTTCCTGGGGGTTATGCATTGTTTTTCCTGTCTCTGGGAGCCAAGCTTTTTCTTTTTTTATTCTTTGTCCCTGCTGACTTCCCGTAGCCGGGTGAGCAAATCGAGTAGTGTGAGGTACAGGGAACATTTCAGGACTGCCTCTTGTTTTCTCTCGCTCGGGACGATGGGAGGCGTGGAGCAAGAGGGGGAGTGTTAGGTGTGGAGGGACGGATGGCGACGGCATTATGCCATGCTGCTGGTGGGCGTGCTCTGGGTGCTGCCGATGCTAGCGTTGGCACTGCTGTCCTCTGAGGGAGACGAGTGGGTGGGCACGGGCTGGCGTTTGGTCAGACCACATGGGCATCCTGATAGAGAGAGGACTGGACAAAAGACAGGGAACATTGAGCACAATCAACAAAAACAAATAAGGACAGATTTCCACGGCAACTATCGGCATGCCCATGGGCGAACAGATGGGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU291382 lncRNA downstream 10683 8653253 ~ 8653672 (-) True G256715
TU291388 lncRNA downstream 16044 8646447 ~ 8648311 (-) True G256721
TU291406 lncRNA downstream 37237 8626894 ~ 8627118 (-) True G256739
TU291405 lncRNA downstream 37526 8626585 ~ 8626829 (-) True G256738
TU291379 lncRNA downstream 74818 8589332 ~ 8589537 (-) True G256713
TU291363 lncRNA upstream 325 8710841 ~ 8712365 (-) True G256697
TU291447 lncRNA upstream 8035 8718551 ~ 8718803 (-) True G256779
TU291449 lncRNA upstream 13728 8724244 ~ 8724461 (-) True G256781
TU291475 lncRNA upstream 98139 8808655 ~ 8832660 (-) True G256807
TU291521 lncRNA upstream 160105 8870621 ~ 8870883 (-) True G256840
CI01000059_08541617_08550032.mRNA mRNA downstream 114323 8541161 ~ 8550032 (-) True CI01000059_08541617_08550032
CI01000059_08483765_08492276.mRNA mRNA downstream 171537 8483458 ~ 8492818 (-) False CI01000059_08483765_08492276
CI01000059_08434015_08446002.mRNA mRNA downstream 218353 8433695 ~ 8446002 (-) True CI01000059_08434015_08446002
CI01000059_08382830_08423907.mRNA mRNA downstream 239631 8382372 ~ 8424724 (-) True CI01000059_08382830_08423907
CI01000059_08360308_08360726.mRNA mRNA downstream 303548 8359765 ~ 8360807 (-) True CI01000059_08360308_08360726
CI01000059_09346204_09347082.mRNA mRNA upstream 635672 9346188 ~ 9348023 (-) True CI01000059_09346204_09347082
CI01000059_09706218_09708197.mRNA mRNA upstream 994754 9705270 ~ 9709619 (-) True CI01000059_09706218_09708197
CI01000059_09783667_09789126.mRNA mRNA upstream 1073113 9783629 ~ 9789298 (-) True CI01000059_09783667_09789126
CI01000059_09797419_09887264.mRNA mRNA upstream 1086864 9797380 ~ 9887264 (-) True CI01000059_09797419_09887264
CI01000059_09908635_09925766.mRNA mRNA upstream 1197371 9907887 ~ 9925766 (-) True CI01000059_09908635_09925766
TU289512 other downstream 2421563 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 3426056 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 3910273 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 5192446 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 6564688 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 271180 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 271180 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 743700 9454216 ~ 9599008 (-) True G257014

Expression Profile