Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016985 |
| length | 4421 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 20 |
| gene id | XLOC_008489 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 22722682 ~ 23188894 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035249 | synaptic transmission, glutamatergic | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0050804 | modulation of chemical synaptic transmission | biological_process |
| GO:0042734 | presynaptic membrane | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0032983 | kainate selective glutamate receptor complex | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0038023 | signaling receptor activity | molecular_function |
| GO:0015276 | ligand-gated ion channel activity | molecular_function |
| GO:0015277 | kainate selective glutamate receptor activity | molecular_function |
| GO:1904315 | transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential | molecular_function |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0004970 | ionotropic glutamate receptor activity | molecular_function |
| GO:0008066 | glutamate receptor activity | molecular_function |
| id | description |
|---|---|
| ko04080 | Neuroactive ligand-receptor interaction |
| ko04724 | Glutamatergic synapse |
| ko04040 | Ion channels |
| id | description |
|---|---|
| ZDB-GENE-070821-5 | Predicted to enable kainate selective glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane. Orthologous to human GRIK4 (glutamate ionotropic receptor kainate type subunit 4). |
| ensembl_id | ENSDART00000156760 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018953 | lncRNA | upstream | 161547 | 22541364 ~ 22561137 (+) | True | XLOC_008488 |
| TCONS_00018952 | lncRNA | upstream | 163712 | 22541364 ~ 22558972 (+) | False | XLOC_008488 |
| TCONS_00018951 | lncRNA | upstream | 171656 | 22541344 ~ 22551028 (+) | False | XLOC_008488 |
| TCONS_00018949 | lncRNA | upstream | 356162 | 22351365 ~ 22366522 (+) | False | XLOC_008483 |
| TCONS_00018950 | lncRNA | upstream | 356162 | 22353025 ~ 22366522 (+) | True | XLOC_008483 |
| TCONS_00018954 | lncRNA | downstream | 18265 | 23207159 ~ 23207464 (+) | True | XLOC_008490 |
| TCONS_00018955 | lncRNA | downstream | 77764 | 23266658 ~ 23268377 (+) | True | XLOC_008492 |
| TCONS_00016992 | lncRNA | downstream | 254780 | 23443674 ~ 23445988 (+) | False | XLOC_008495 |
| TCONS_00018956 | lncRNA | downstream | 279090 | 23467984 ~ 23505657 (+) | True | XLOC_008496 |
| TCONS_00016998 | lncRNA | downstream | 339293 | 23528187 ~ 23529174 (+) | False | XLOC_008497 |
| TCONS_00016983 | mRNA | upstream | 183841 | 22448456 ~ 22538843 (+) | False | XLOC_008487 |
| TCONS_00016982 | mRNA | upstream | 183841 | 22448456 ~ 22538843 (+) | False | XLOC_008487 |
| TCONS_00016981 | mRNA | upstream | 183841 | 22448456 ~ 22538843 (+) | True | XLOC_008487 |
| TCONS_00016980 | mRNA | upstream | 277938 | 22435460 ~ 22444746 (+) | True | XLOC_008486 |
| TCONS_00016977 | mRNA | upstream | 291099 | 22390076 ~ 22431585 (+) | False | XLOC_008484 |
| TCONS_00016988 | mRNA | downstream | 19148 | 23208042 ~ 23265405 (+) | True | XLOC_008491 |
| TCONS_00016989 | mRNA | downstream | 167706 | 23356600 ~ 23358807 (+) | True | XLOC_008493 |
| TCONS_00016991 | mRNA | downstream | 254771 | 23443665 ~ 23451449 (+) | False | XLOC_008495 |
| TCONS_00016995 | mRNA | downstream | 334443 | 23523337 ~ 23528714 (+) | False | XLOC_008497 |
| TCONS_00016994 | mRNA | downstream | 334443 | 23523337 ~ 23528714 (+) | False | XLOC_008497 |
| TCONS_00016979 | other | upstream | 308431 | 22414124 ~ 22414253 (+) | True | XLOC_008485 |
| TCONS_00016972 | other | upstream | 719488 | 22003082 ~ 22003196 (+) | True | XLOC_008478 |
| TCONS_00016964 | other | upstream | 952675 | 21767524 ~ 21770009 (+) | True | XLOC_008473 |
| TCONS_00016960 | other | upstream | 1007019 | 21711660 ~ 21715665 (+) | False | XLOC_008472 |
| TCONS_00016955 | other | upstream | 1274884 | 21447656 ~ 21447800 (+) | True | XLOC_008467 |
| TCONS_00016990 | other | downstream | 189177 | 23378071 ~ 23378188 (+) | True | XLOC_008494 |
| TCONS_00016993 | other | downstream | 257295 | 23446189 ~ 23450686 (+) | True | XLOC_008495 |
| TCONS_00017027 | other | downstream | 1374874 | 24563768 ~ 24569062 (+) | False | XLOC_008513 |
| TCONS_00017035 | other | downstream | 1488019 | 24676913 ~ 24683290 (+) | False | XLOC_008517 |
| TCONS_00017050 | other | downstream | 1773242 | 24962136 ~ 24962252 (+) | True | XLOC_008523 |
