RNA id: TU291382


Basic Information

Item Value
RNA id TU291382
length 332
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G256715
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8653253 ~ 8653672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAGGAAAAGAGGGTTTGTTGTCAAGTGCTTTTTACTTCAGCTCATCAATAGCTTTTTCAACAATTGCAAATACTTCGTCCACTGGCAGCTCAGAGTTTCTTCCTGACGATCCCGCGCTGCTCGTAGTAAGCGATGACGGGCTCGGTGGCTTTGTAATACAGATCCAGACGCTTCTTGATGGTTTCCTCGTTGTCGTCGGAGCGGCCGCTGGTCTCTCCGCGCTTCACCAGCCTCTTCACCATGGTCTCGGCCTTCGCGTCAATGTATAGCAGCAGAGCTGGAGCACCGATCTGACCGGGAGAGATGGACACGGCAATCTGAGCGTCTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291388 lncRNA downstream 4942 8646447 ~ 8648311 (-) True G256721
TU291406 lncRNA downstream 26135 8626894 ~ 8627118 (-) True G256739
TU291405 lncRNA downstream 26424 8626585 ~ 8626829 (-) True G256738
TU291379 lncRNA downstream 63716 8589332 ~ 8589537 (-) True G256713
TU291378 lncRNA downstream 64627 8588398 ~ 8588626 (-) True G256712
TU291361 lncRNA upstream 10683 8664355 ~ 8710516 (-) False G256696
TU291434 lncRNA upstream 21221 8674893 ~ 8676170 (-) True G256766
TU291360 lncRNA upstream 40205 8693877 ~ 8710516 (-) True G256696
TU291363 lncRNA upstream 57169 8710841 ~ 8712365 (-) True G256697
TU291447 lncRNA upstream 64879 8718551 ~ 8718803 (-) True G256779
CI01000059_08541617_08550032.mRNA mRNA downstream 103221 8541161 ~ 8550032 (-) True CI01000059_08541617_08550032
CI01000059_08483765_08492276.mRNA mRNA downstream 160435 8483458 ~ 8492818 (-) False CI01000059_08483765_08492276
CI01000059_08434015_08446002.mRNA mRNA downstream 207251 8433695 ~ 8446002 (-) True CI01000059_08434015_08446002
CI01000059_08382830_08423907.mRNA mRNA downstream 228529 8382372 ~ 8424724 (-) True CI01000059_08382830_08423907
CI01000059_08360308_08360726.mRNA mRNA downstream 292446 8359765 ~ 8360807 (-) True CI01000059_08360308_08360726
CI01000059_09346204_09347082.mRNA mRNA upstream 692516 9346188 ~ 9348023 (-) True CI01000059_09346204_09347082
CI01000059_09706218_09708197.mRNA mRNA upstream 1051598 9705270 ~ 9709619 (-) True CI01000059_09706218_09708197
CI01000059_09783667_09789126.mRNA mRNA upstream 1129957 9783629 ~ 9789298 (-) True CI01000059_09783667_09789126
CI01000059_09797419_09887264.mRNA mRNA upstream 1143708 9797380 ~ 9887264 (-) True CI01000059_09797419_09887264
CI01000059_09908635_09925766.mRNA mRNA upstream 1254215 9907887 ~ 9925766 (-) True CI01000059_09908635_09925766
TU289512 other downstream 2410461 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 3414954 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 3899171 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 5181344 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 6553586 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 328024 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 328024 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 800544 9454216 ~ 9599008 (-) True G257014

Expression Profile