RNA id: TU291447


Basic Information

Item Value
RNA id TU291447
length 253
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G256779
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8718551 ~ 8718803 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATATCACAGACGCCGCATGAGGTTGATGGAAACGTGCTGTATTTGTTCCTCTACACACTGGTGATATATATATGTGAGAAAAAAAAAAAATTCCAATTACAGAAAAAAAAAGGAAAAGTGGAAATAAGCTGCTTATGAATTGTAGTCAGGGCAATAGCATTCATTATGCAGCATATGAGTGTTTCTTCAGTATGGACTTTTAGAAAATAAACTCTCCTAAACACACTTTCACTCCCTCACTAGTTCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291363 lncRNA downstream 6186 8710841 ~ 8712365 (-) True G256697
TU291361 lncRNA downstream 8035 8664355 ~ 8710516 (-) False G256696
TU291360 lncRNA downstream 8035 8693877 ~ 8710516 (-) True G256696
TU291434 lncRNA downstream 42381 8674893 ~ 8676170 (-) True G256766
TU291382 lncRNA downstream 64879 8653253 ~ 8653672 (-) True G256715
TU291449 lncRNA upstream 5441 8724244 ~ 8724461 (-) True G256781
TU291475 lncRNA upstream 89852 8808655 ~ 8832660 (-) True G256807
TU291521 lncRNA upstream 151818 8870621 ~ 8870883 (-) True G256840
TU291558 lncRNA upstream 225710 8944513 ~ 8947153 (-) True G256876
TU291501 lncRNA upstream 237666 8956469 ~ 9006364 (-) False G256820
CI01000059_08541617_08550032.mRNA mRNA downstream 168519 8541161 ~ 8550032 (-) True CI01000059_08541617_08550032
CI01000059_08483765_08492276.mRNA mRNA downstream 225733 8483458 ~ 8492818 (-) False CI01000059_08483765_08492276
CI01000059_08434015_08446002.mRNA mRNA downstream 272549 8433695 ~ 8446002 (-) True CI01000059_08434015_08446002
CI01000059_08382830_08423907.mRNA mRNA downstream 293827 8382372 ~ 8424724 (-) True CI01000059_08382830_08423907
CI01000059_08360308_08360726.mRNA mRNA downstream 357744 8359765 ~ 8360807 (-) True CI01000059_08360308_08360726
CI01000059_09346204_09347082.mRNA mRNA upstream 627385 9346188 ~ 9348023 (-) True CI01000059_09346204_09347082
CI01000059_09706218_09708197.mRNA mRNA upstream 986467 9705270 ~ 9709619 (-) True CI01000059_09706218_09708197
CI01000059_09783667_09789126.mRNA mRNA upstream 1064826 9783629 ~ 9789298 (-) True CI01000059_09783667_09789126
CI01000059_09797419_09887264.mRNA mRNA upstream 1078577 9797380 ~ 9887264 (-) True CI01000059_09797419_09887264
CI01000059_09908635_09925766.mRNA mRNA upstream 1189084 9907887 ~ 9925766 (-) True CI01000059_09908635_09925766
TU289512 other downstream 2475759 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 3480252 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 3964469 4753538 ~ 4754082 (-) True G253914
TU287202 other downstream 5246642 3471475 ~ 3471909 (-) True G253013
TU286339 other downstream 6618884 2099629 ~ 2099667 (-) True G252257
TU291574 other upstream 262893 8981696 ~ 8982117 (-) False G256890
TU291575 other upstream 262893 8981696 ~ 8982117 (-) True G256890
TU291707 other upstream 735413 9454216 ~ 9599008 (-) True G257014

Expression Profile