RNA id: TU291565


Basic Information

Item Value
RNA id TU291565
length 558
lncRNA type intronic
GC content 0.45
exon number 2
gene id G256883
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8963296 ~ 9012747 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCACTAACCCTAAAATTTACATAAACCCCGCCCCCGAGAACACACAACAAAGGGGGTGAGGCCATGTTGGGCTGCTTTAGAGAAGAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGTCATGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTCAACGCTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAAACATTCAGAAACATCCAGTTTCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCGACCAAAGCGCGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACTGCGTGTTTTTGCTCACACCCAAATAGAGGCAAATTTGACAAGCTATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291501 lncRNA downstream 5763 8956469 ~ 9006364 (-) False G256820
TU291500 lncRNA downstream 5763 8997393 ~ 9006364 (-) True G256820
TU291583 lncRNA downstream 13334 8996383 ~ 8998793 (-) True G256898
TU291579 lncRNA downstream 21850 8989918 ~ 8990277 (-) True G256894
TU291558 lncRNA downstream 64974 8944513 ~ 8947153 (-) True G256876
TU291614 lncRNA upstream 38670 9051417 ~ 9051634 (-) True G256929
TU291632 lncRNA upstream 103231 9115978 ~ 9116179 (-) True G256947
TU291641 lncRNA upstream 114033 9126780 ~ 9280018 (-) False G256951
TU291642 lncRNA upstream 160231 9172978 ~ 9222939 (-) False G256951
TU291639 lncRNA upstream 170568 9183315 ~ 9265424 (-) False G256951
CI01000059_08541617_08550032.mRNA mRNA downstream 462095 8541161 ~ 8550032 (-) True CI01000059_08541617_08550032
CI01000059_08483765_08492276.mRNA mRNA downstream 519309 8483458 ~ 8492818 (-) False CI01000059_08483765_08492276
CI01000059_08434015_08446002.mRNA mRNA downstream 566125 8433695 ~ 8446002 (-) True CI01000059_08434015_08446002
CI01000059_08382830_08423907.mRNA mRNA downstream 587403 8382372 ~ 8424724 (-) True CI01000059_08382830_08423907
CI01000059_08360308_08360726.mRNA mRNA downstream 651320 8359765 ~ 8360807 (-) True CI01000059_08360308_08360726
CI01000059_09346204_09347082.mRNA mRNA upstream 333441 9346188 ~ 9348023 (-) True CI01000059_09346204_09347082
CI01000059_09706218_09708197.mRNA mRNA upstream 692523 9705270 ~ 9709619 (-) True CI01000059_09706218_09708197
CI01000059_09783667_09789126.mRNA mRNA upstream 770882 9783629 ~ 9789298 (-) True CI01000059_09783667_09789126
CI01000059_09797419_09887264.mRNA mRNA upstream 784633 9797380 ~ 9887264 (-) True CI01000059_09797419_09887264
CI01000059_09908635_09925766.mRNA mRNA upstream 895140 9907887 ~ 9925766 (-) True CI01000059_09908635_09925766
TU291574 other downstream 30010 8981696 ~ 8982117 (-) False G256890
TU291575 other downstream 30010 8981696 ~ 8982117 (-) True G256890
TU289512 other downstream 2769335 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 3773828 5237786 ~ 5238299 (-) True G254203
TU288177 other downstream 4258045 4753538 ~ 4754082 (-) True G253914
TU291707 other upstream 441469 9454216 ~ 9599008 (-) True G257014

Expression Profile