RNA id: TU291937


Basic Information

Item Value
RNA id TU291937
length 2455
lncRNA type intronic
GC content 0.38
exon number 2
gene id G257236
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 9736229 ~ 9739091 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACCTAAACCAGCATATGCTGGTTTTTTCAACAGGGCTGATGAAGAAATCTCAGTTTCAGAAGAGATCTCAATAATGTCTCACACTGAGCTCAGATTTGCCAAGATGCCAAAGTCTGCAACCAAAAGTCCAACATCTCAATATGAACTCAAACGAAGCTATGCCAAACATAGATCATGTTATAGTTCTTCACTTTTACTGTATTTCAAAGAGCATCTCATTTGTTTTCTATTTGCATTCATCCAATGAAGGAACTGAGATCTTCAATAAGGCCCTGTTTCCACCTGGTATTATGATGCATTTTGGTCAACCGGATCACAAGTGGACGACGTCAAATACAGGAGTAAATGGGGTCTAAGATGTTTTGAGCTTGTCCAGTTTCGACCACTTCCAGAGGGAGTTGAAAACGCATTCAAAAGGATTGCTTTCGTAGTGGAAACGCTCATGTAGTTGAATGTTTTCGAACAGCCACAAAAGACTGCCTACTCTCCGCCTACAGTTTCGTGAATCCAGCTGCTCCTGGTGTGAGTTGACACCGCGTAGAGGACGGAACAAAACCTCGCCAGAGCCGTAACGCGTGTCAGACATGTGAAGTATTGAGCAGTAATCAAAAGTGTGACGTCATATGTCAGTATACATAATGCATGTCTCACAAATGCTGCATGTGCTTCATATATCAAAAGCAGCTGATGTAAATCATTGGAACTGTTGAGCAGAAACACTAAATCGACAAGCAATTAAAGCAACGATCGCCAAAAGATCAGCCACTATGCAAGACATTGTAGTATCCTTGGTTACACTTTATTTTGATGGTCCACTTTAGACATTCTACTAACTATAAGTAACTTTGCAACTTCATGTCAACTAACTCTCATTAGAGTATTAGTAGACTGTTAGGTTAGGGTTCGGGTTACTTATAGTCAGTAAAATGTCTGTTGGGGAGCATCAAAATAAAGCGTTAGCAGATCTACTAATCGTCTCCCTTATAGATTCATAATAGATCTAAATGTCTCAAACTGCGCTCAGACATGCCAACATACCTGCAATCAACAGAGATCTCAATATAAACTCAAAAATTTCTGCAAAAAAGCAAGTGCTGAGCAATGAAATTTTAGAAAAGCAAAGCAAATGTATATGCTGAATTCGGTTATCGCCCACCGTGTATGAAAGCTTCTGGAAACTTGTAAAGCTGTTCAAACGGGCAAACCAATGAAGGAATCACATGAGAGAGACAAATGTCAGCTGCCAAGCAGGTCACGTCCGTTTATGTTGGATCCATTTCCAAAATGTGATTTTGAAAAGGGACTATGGTTTGGCTTTTCGAAATCACCATTATATTTGACAAGGTCAGAGCTAATAGCAATATCCATGAGACATCTCACTTGGTTCCTCCTTCACCGTGCCAGTGAGTTTGCAGTGCTTCAGCAAACGTATGCCATCTAGAGGCTTTAAACGAATCTTTCAATGTGGCAAGAGGTTGAAAAGAGTTAACATTTTTTTTTTTGTCTTGCGCTATTCCAATCACAGTGTTAACTGAGGAAAAAGTCCTGTTCATCTGGCATTTTCTTTGGACTGTCAGATGAGTGATCTATTCAACACATTTACACTTTATTCACATTTCTACACAATAAAACCTGTTTTTGGCAATGGTGGAATTTTCTGCAAATTTGAAAACACTGCTTAAACCATGAGAAAAGTTTCATGATAGGCATTCTGAAGCTCACATTTTCCATGTGAAGATGTTGGGTACATGCTTTGCCACTTTTTTTTTTCTCTTTTTTTTTCTTTTTTAATTATATGACCTGAGAAGTGATTTATTACAAGACAAAATTCCTTGTATTTGAGATGACATTTTACCACATTCATACCTCCTACATCCTGGAGAGTGTCCTTACTCATTCATTAGTATTAGTATTATGTCAATCTGTTGCCGTTGCACTGCGACTTTGAGCGCAGGAAATATGTGGTGTTTTTTCCTCCCTTAATGGTGTACTAAATAGTTGATTTTGGCTTGTCTGATGTTTTGACTGTGTTCATGATGGATTCATTCTGACGTTCAGGACAGCTAGTTTTCCTTGCATTACTTGCAACTCCAAAAAGCGTGTTACCAGCAAGCTTTGAGAACAAAAATAAACACTGACAGTTTCCCTGCAACAGCTAAACAAAAAGAACCATCAAAAACAATTTACCAGACAACTTTGGTGCCTGAAAATGAGGGACTGTGCAAGAATCAAGTCACGGACAGCGCTGGGTTGATTACTTACAGATTGTAGCCAGTTACTGATTCCAAATTACATAACAAAAATTGTACTTAGTAATATAATCTGTATTCTGACTACTTTTTGATTACTTTTGACCTAACTCGTTTATCGCATTGATTTGAATAGGCCAATCTTTTACCATATTGAAATAAAAATACAAAGAGAAAGAAAATATATAACTATCAAAATAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291928 lncRNA downstream 3006 9727621 ~ 9733223 (-) True G257227
TU291872 lncRNA downstream 97833 9619739 ~ 9638396 (-) True G257172
TU291858 lncRNA downstream 122728 9595007 ~ 9613501 (-) True G257159
TU291857 lncRNA downstream 122992 9594492 ~ 9613237 (-) True G257158
TU291854 lncRNA downstream 142864 9591586 ~ 9593365 (-) True G257156
TU291945 lncRNA upstream 36062 9775153 ~ 9775369 (-) True G257244
TU291946 lncRNA upstream 37115 9776206 ~ 9776475 (-) True G257245
TU291971 lncRNA upstream 225951 9965042 ~ 9965268 (-) True G257270
TU291973 lncRNA upstream 229345 9968436 ~ 9968675 (-) True G257272
TU291976 lncRNA upstream 235269 9974360 ~ 9974595 (-) True G257275
CI01000059_09706218_09708197.mRNA mRNA downstream 26610 9705270 ~ 9709619 (-) True CI01000059_09706218_09708197
CI01000059_09346204_09347082.mRNA mRNA downstream 388206 9346188 ~ 9348023 (-) True CI01000059_09346204_09347082
CI01000059_08541617_08550032.mRNA mRNA downstream 1186197 8541161 ~ 8550032 (-) True CI01000059_08541617_08550032
CI01000059_08483765_08492276.mRNA mRNA downstream 1243411 8483458 ~ 8492818 (-) False CI01000059_08483765_08492276
CI01000059_08434015_08446002.mRNA mRNA downstream 1290227 8433695 ~ 8446002 (-) True CI01000059_08434015_08446002
CI01000059_09783667_09789126.mRNA mRNA upstream 44538 9783629 ~ 9789298 (-) True CI01000059_09783667_09789126
CI01000059_09797419_09887264.mRNA mRNA upstream 58289 9797380 ~ 9887264 (-) True CI01000059_09797419_09887264
CI01000059_09908635_09925766.mRNA mRNA upstream 168796 9907887 ~ 9925766 (-) True CI01000059_09908635_09925766
CI01000059_09990989_09995182.mRNA mRNA upstream 250412 9989503 ~ 9995251 (-) True CI01000059_09990989_09995182
CI01000059_09996144_10002811.mRNA mRNA upstream 256962 9996053 ~ 10002862 (-) True CI01000059_09996144_10002811
TU291707 other downstream 137221 9454216 ~ 9599008 (-) True G257014
TU291574 other downstream 754112 8981696 ~ 8982117 (-) False G256890
TU291575 other downstream 754112 8981696 ~ 8982117 (-) True G256890
TU289512 other downstream 3493437 6236106 ~ 6242792 (-) True G255092
TU288508 other downstream 4497930 5237786 ~ 5238299 (-) True G254203

Expression Profile