RNA id: TCONS_00016998


Basic Information

Item Value
RNA id TCONS_00016998
length 422
lncRNA type retained_intron
GC content 0.40
exon number 2
gene id XLOC_008497
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23523337 ~ 23542144 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTCATAACTGTGGACACTATGGGGAGGTACGAGCTTTTTCAGAGTCAAACCTCTCTCATCATAACATTACTGACGGACACTGCAAAACACGAGATACAAAAGGCTTTTACGAACATCTCAAATGAATCCAGTCTCTCTGACATACTAAACGACCCTCAAATTCAAATGCTTAATTCCATCATGGACAGGCTCACTAAAGAAGCAGTGCAGAAGATTTGTAGTCTCTTCAGATACTGTTCATCTGTTGCACCTCTTCCTGCTCAAATGAGTCTGAGTGATGAAGACGGTTTGAGGAAGACTTCATCTCAGTCAAGATGTGATTTCAGTGGAACAACATATATCCATAACCAGAGTACAGTATCACACACAGTATAGAGgattttttactgtgttttttaacCTAGTATTTCAAGTCACATT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4134 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000152422

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018956 lncRNA upstream 22530 23467984 ~ 23505657 (+) True XLOC_008496
TCONS_00016992 lncRNA upstream 82199 23443674 ~ 23445988 (+) False XLOC_008495
TCONS_00018955 lncRNA upstream 259810 23266658 ~ 23268377 (+) True XLOC_008492
TCONS_00018954 lncRNA upstream 320723 23207159 ~ 23207464 (+) True XLOC_008490
TCONS_00018953 lncRNA upstream 967050 22541364 ~ 22561137 (+) True XLOC_008488
TCONS_00017009 lncRNA downstream 255685 23784859 ~ 23789828 (+) False XLOC_008501
TCONS_00017015 lncRNA downstream 470395 23999569 ~ 24005283 (+) True XLOC_008505
TCONS_00017017 lncRNA downstream 506733 24035907 ~ 24042013 (+) True XLOC_008504
TCONS_00018775 lncRNA downstream 603380 24132554 ~ 24132837 (+) True XLOC_008506
TCONS_00018957 lncRNA downstream 620794 24149968 ~ 24162100 (+) True XLOC_008507
TCONS_00016996 mRNA upstream 471 23523345 ~ 23527716 (+) False XLOC_008497
TCONS_00016991 mRNA upstream 76738 23443665 ~ 23451449 (+) False XLOC_008495
TCONS_00016989 mRNA upstream 169380 23356600 ~ 23358807 (+) True XLOC_008493
TCONS_00016988 mRNA upstream 262782 23208042 ~ 23265405 (+) True XLOC_008491
TCONS_00016985 mRNA upstream 339293 22722684 ~ 23188894 (+) False XLOC_008489
TCONS_00017001 mRNA downstream 4952 23534126 ~ 23542144 (+) True XLOC_008497
TCONS_00017002 mRNA downstream 21716 23550890 ~ 23618931 (+) False XLOC_008498
TCONS_00017003 mRNA downstream 21793 23550967 ~ 23641516 (+) False XLOC_008498
TCONS_00017004 mRNA downstream 79907 23609081 ~ 23614121 (+) True XLOC_008498
TCONS_00017005 mRNA downstream 127877 23657051 ~ 23677446 (+) True XLOC_008499
TCONS_00016993 other upstream 77501 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00016990 other upstream 149999 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016984 other upstream 765749 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other upstream 795154 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016979 other upstream 1113934 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00017027 other downstream 1034594 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00017035 other downstream 1147739 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017050 other downstream 1432962 24962136 ~ 24962252 (+) True XLOC_008523
TCONS_00017063 other downstream 1940555 25469729 ~ 25469845 (+) True XLOC_008536
TCONS_00017070 other downstream 2106167 25635341 ~ 25656331 (+) True XLOC_008540

Expression Profile

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