RNA id: CI01000062_00953238_00953543.mRNA


Basic Information

Item Value
RNA id CI01000062_00953238_00953543.mRNA
length 1505
RNA type mRNA
GC content 0.42
exon number 1
gene id CI01000062_00953238_00953543
representative True

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 952511 ~ 954015 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATTAGATGTCTGCCGCTACAATCAGAGCTGAATTAGCCCTAATATTTATTTCCAGAAACAATTGTACATTCCTCAGCAGGGCAATGATTGGACATGTTGTGGACAGATGTTTAGATGAGCTCATGTTTTAATGTTGATTTTGGAGGGTTCTTCTCCAAATCGCCTTTTTATACACCCACTTCTGTGTCGACTTTTGTCTTTTTATCACTGGACACAGAAAGCGATTCTATGAACAATCAGAGTTTTACTGATATTTATGTAATTATGCAATCATCAGATAAGAAAACTTGACTAGTGCGCTTCTCGATGTGTAGAAAACCGTTCTCAAAATGGGGCAAAAACGCAATTAAACCATAATAAACATTACAAAAACAAACAAGAGGAGATTTATTGACTGCTACGACTAATTAGCTCTGGAGGAAATGTGCAGGATCATAATGTCACAAGAAATCAGTTGACTGCAACCAGGCATGAAGTATAATGGTAACATATGCAGCAAGGAGCTTAAGACTCTCCAAACAGATCATATACCTCCCACAGGTACCTGCAGTAGATTGGAGCAGCTCTTAAAAAGAGCAAACACCTCAAATGTGCGCAAATATGCGTTTGTTTACACCACGAATGGATTACTTTCTTCTGGTGATCATAAAACATCACTCCCTCTGAGTCTGACCCATACGCCTGCCTGCAAGAACTACTGTCGAACTACTGTTTGCATGAGCCGGATGTGGATTGTCGCTGTTGTGTCAGCTGTTTATCAGCGAGCCGAGCCTTGAACGGATGGAGTTTAGTCTGCCGGGGTAATGTACGAGCCAGCCAGGGGCCGCCGACGTTATCTTAATGGTATGATTTATGGAGGTCGCGCGCTGAACTGAGCAGAGGAGCCGCGACAGATGGGGACGTGCGTGGGAGACGTTACTGTAGACGGTTCGCGCGCGGGCGCGCACACACACACAACCACACATACGCTCATCCATCATGTATTTTGTGTTGCTGTAAGCAATGAGGATAATTGCGGTGTTATGGTAAGAGTAGCGTGATTATGATTGTTCGACATGGGAGGCTGTGTCTGGGCTAGCGCTCGCGCTCATTTTCCCGGGCAAATTATTAAAATGAGGCCTTTGGAGCGAACTGAAAAGACTGAAAGGAGTTGGCTGGCTACAGCAAATACAATATATTCAATCGCCTGATAACGATGGTGATCTAATCAGTGATGTTAATGTTAACCACATTCATTTTTGATAAAACATACTCTCTGTGTTTGAATGACGTTTGTGCCGTTGGCGAAAATTCACGTCAAGCTAAATTGGCTCATTTATGAATTTTTCTATTAAGAAATCTTGGCATATCTAACGTGAGTGTGTAAACGCGGCTTTTAAAGTCAGTTTAATTGTCCCTGGTAAAGAAAAATGTTTTCGTATTCTTTCATTAAATGGTAACGACTTCTGGCTCCGAAACGACTTTCCTTTTTGGTGACGTCACATAGGAAATTTAGTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294535 lncRNA downstream 173531 778684 ~ 778980 (-) True G259421
TU294533 lncRNA downstream 190550 761758 ~ 761961 (-) True G259419
TU294531 lncRNA downstream 204397 747864 ~ 748114 (-) True G259417
TU294530 lncRNA downstream 208210 744095 ~ 744301 (-) True G259416
TU294527 lncRNA downstream 223653 728624 ~ 728858 (-) True G259414
TU294495 lncRNA upstream 43327 1009969 ~ 1010168 (-) True G259382
TU294580 lncRNA upstream 65492 1019507 ~ 1105910 (-) True G259465
TU294635 lncRNA upstream 378818 1332833 ~ 1340353 (-) False G259516
TU294636 lncRNA upstream 378913 1332928 ~ 1340498 (-) True G259516
TU294728 lncRNA upstream 535915 1489930 ~ 1496220 (-) False G259597
CI01000062_00877361_00878217.mRNA mRNA downstream 73836 875653 ~ 878675 (-) True CI01000062_00877361_00878217
CI01000062_00842607_00851041.mRNA mRNA downstream 101470 842416 ~ 851041 (-) True CI01000062_00842607_00851041
CI01000062_00808148_00808981.mRNA mRNA downstream 143409 807733 ~ 809102 (-) True CI01000062_00808148_00808981
CI01000062_00799628_00801034.mRNA mRNA downstream 150011 799045 ~ 802500 (-) True CI01000062_00799628_00801034
CI01000062_00770718_00777617.mRNA mRNA downstream 174687 770590 ~ 777824 (-) True CI01000062_00770718_00777617
CI01000062_00963254_00999381.mRNA mRNA upstream 9191 963206 ~ 999381 (-) False CI01000062_00963254_00999381
CI01000062_01131089_01166027.mRNA mRNA upstream 176850 1130865 ~ 1166607 (-) True CI01000062_01131089_01166027
CI01000062_01191296_01194695.mRNA mRNA upstream 236678 1190693 ~ 1194695 (-) True CI01000062_01191296_01194695
CI01000062_01210373_01227487.mRNA mRNA upstream 256045 1210060 ~ 1227487 (-) True CI01000062_01210373_01227487
CI01000062_01361295_01382538.mRNA mRNA upstream 407280 1361295 ~ 1382771 (-) True CI01000062_01361295_01382538
TU293258 other downstream 936799 13737 ~ 13821 (-) True G258325
TU296692 other upstream 2991420 3945435 ~ 3957385 (-) True G261400

Expression Profile