RNA id: TCONS_00017017


Basic Information

Item Value
RNA id TCONS_00017017
length 539
lncRNA type retained_intron
GC content 0.50
exon number 4
gene id XLOC_008504
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23947932 ~ 24120921 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTGCCATCTTCAAACACCAGCCCAAAGGAACATTACAGAGATCCACCTCATTCCGCCAGGGACCAGACGATGCTGGCACAGGAGACAATTCAGGTCCAAAAATTACAGCTTTGGAGTGTCTGGAGGCCATGGCTGCTGGGCTTTACTCTGAGCTATTTACTTTGGTCATCTCACTTGTTAACAGAGCACTAAAGTCGAGTCAGCATTCCCTGTGCTCTCTGCTTATTGTGGACACACCGGGATTCCAGAACCCAAAGTTAGCCAAGCGAGAGCGTGGTGCCACCTTCGAGGAGCTCTGCCACAACTATGCACAGGAGCGTCTCCAAACACTTTTCCACGAACGCACCTTTGTACAGGAGCTGGAGCGCTACAAGGAGGAGAACATAGAGCTTGCATTAGATGACATAGAGTCCAGTACATCTCTGTCTGTAGCAGCTATAGACCAAGCCTCATCTCAAGCATTGGTAAGCAACTCTTTCATCCCGTCCTCATCTCTCCTTCTCTCCTCAGGTTTCTGTTGTGCATCCCAGGCTGTCC

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0060415 muscle tissue morphogenesis biological_process
GO:0007030 Golgi organization biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080423-1 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Acts upstream of or within several processes, including cell-matrix adhesion; muscle cell development; and muscle tissue morphogenesis. Predicted to be part of myosin complex. Is expressed in head; notochord; skeletal muscle cell; and somite. Orthologous to human MYO18A (myosin XVIIIA).

Ensembl:

ensembl_id ENSDART00000156944

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017015 lncRNA upstream 30624 23999569 ~ 24005283 (+) True XLOC_008505
TCONS_00017009 lncRNA upstream 246079 23784859 ~ 23789828 (+) False XLOC_008501
TCONS_00016998 lncRNA upstream 506733 23528187 ~ 23529174 (+) False XLOC_008497
TCONS_00018956 lncRNA upstream 530250 23467984 ~ 23505657 (+) True XLOC_008496
TCONS_00016992 lncRNA upstream 589919 23443674 ~ 23445988 (+) False XLOC_008495
TCONS_00018775 lncRNA downstream 90541 24132554 ~ 24132837 (+) True XLOC_008506
TCONS_00018957 lncRNA downstream 107955 24149968 ~ 24162100 (+) True XLOC_008507
TCONS_00018776 lncRNA downstream 137919 24179932 ~ 24205981 (+) True XLOC_008508
TCONS_00018777 lncRNA downstream 149697 24191710 ~ 24198497 (+) True XLOC_008509
TCONS_00018958 lncRNA downstream 270543 24312556 ~ 24313122 (+) True XLOC_008511
TCONS_00017012 mRNA upstream 117424 23911655 ~ 23918483 (+) True XLOC_008503
TCONS_00017011 mRNA upstream 234408 23799461 ~ 23801499 (+) True XLOC_008502
TCONS_00017008 mRNA upstream 245735 23784848 ~ 23790172 (+) False XLOC_008501
TCONS_00017007 mRNA upstream 245736 23784842 ~ 23790171 (+) False XLOC_008501
TCONS_00017018 mRNA downstream 170834 24212847 ~ 24544680 (+) False XLOC_008510
TCONS_00017019 mRNA downstream 346769 24388782 ~ 24533380 (+) False XLOC_008510
TCONS_00017020 mRNA downstream 346769 24388782 ~ 24535558 (+) False XLOC_008510
TCONS_00017021 mRNA downstream 346793 24388806 ~ 24535558 (+) True XLOC_008510
TCONS_00017022 mRNA downstream 507041 24549054 ~ 24563042 (+) True XLOC_008512
TCONS_00016993 other upstream 585221 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00016990 other upstream 657719 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016984 other upstream 1273469 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other upstream 1302874 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016979 other upstream 1621654 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00017027 other downstream 521755 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00017035 other downstream 634900 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017050 other downstream 920123 24962136 ~ 24962252 (+) True XLOC_008523
TCONS_00017063 other downstream 1427716 25469729 ~ 25469845 (+) True XLOC_008536
TCONS_00017070 other downstream 1593328 25635341 ~ 25656331 (+) True XLOC_008540

Expression Profile

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