RNA id: TU294635


Basic Information

Item Value
RNA id TU294635
length 1364
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G259516
representative False

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 1332833 ~ 1340498 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGGACAAATATATTTATAGTATATTTTATCATTTCATTTGAGGAAAAAGAATGTGAGGGACAAGTAGAGGTTTAAAACATACATTTAATGTATATAATGTTCAGTTTAATTTTAAAGGGGTCTTTATTGACTAGTGCCCCCAGTGGAACATCACTGTGTGCTGCTATAGCAGACAACATTTTAAAAACAAATTAGTACTTTCTGAAACATGGCATGGTTTGGTCATTTCGACTTTGGTTTAACAATAGGTGGATAAAAAACAAAAATCAAGCTCTTCTAAAAACAAGCTTATAGATTGAGAAAACCCTGTAAATGGAAAAGAAGAGTACAGTTAGTGCATGTTACATCATCTACTTTAAGTATAGGTAAAATTTATCCATTTTATTTTGGTAAACTCACCTGTGCAATTGCCTATTTGAATGTGTGGCTCTCAGTGCCGCCACGTCCAAAACCTGGGGGCAAAAAGAGAAAAATTATTAAATATAATAATAAGGATGCATGATCTTACCAGGCTAATCGGTTAACATGCTAATTAAAAAAACTCTGTATAAGTAGCAGGAAGACATTTGCATTAAGTAAAACTGGATAATTCAAGACATTTGAATAACTTCCTGTGATGAGAGAGATTTTATAGTGGTCAAATACTGTCCCACAGCAGTTCCATGTGTTTATGAGGTGAAGCACTTGTGTATATCATGTGATACTCTAGTTGAGCAGTAACCCTATCCAGCACAGTAAAAGATAGCATCAAAACAGAGCATTGTAGAAACTCACCTTTAGGTCCAAAGAGTGCAGAGTAACATGGGTTGTTACAATAGGGCTTCCCCTCATGCTGTGAGGTGAAACACATTAGTCAGTACATTAATGGACTTGAACGGGGGTCATTATGCAAGACCTTCCTCAAGACATAATACTCTGACAGCCTAACCCCTGAAGTGTTTATGTAAGGTAAAAGTATGCCAAAAGTTATCTGGACTCCATTAAGTCTGCCTGGAACATTAATCTGTCCCAGTGAGAGGTTGGCAGTCCATGTGTAATTCTGCTACTGACTTACCTCTGCGTGTGAGCCAGCCGACAGGGTCTTGTTGCATTTCTCACACTTCAGACAGGGTCTATGCCAGTCTTTGCCAAGTGATGACACTCTCTCCGCTGAACACTTCCTTCTCGCACTTTGGGCATTTAGGCATGTTTGCGGTGATTTAGTTCCTCGGAGGAGAAAATCCTGCTTGTATAAAGTTGAGATGGAGTCCACCTGCACACAGCCACGCCTTTGGTTTGAGACTATCTACTCTGCAGCCTTATTTATAGTACTGTGGAAATAGTTTGCACACGGTGACAGAAAGAGAGAGGGAGAGAGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294580 lncRNA downstream 226923 1019507 ~ 1105910 (-) True G259465
TU294495 lncRNA downstream 322665 1009969 ~ 1010168 (-) True G259382
TU294535 lncRNA downstream 553853 778684 ~ 778980 (-) True G259421
TU294533 lncRNA downstream 570872 761758 ~ 761961 (-) True G259419
TU294531 lncRNA downstream 584719 747864 ~ 748114 (-) True G259417
TU294728 lncRNA upstream 149577 1489930 ~ 1496220 (-) False G259597
TU294729 lncRNA upstream 149577 1489930 ~ 1499660 (-) True G259597
TU294730 lncRNA upstream 164694 1505047 ~ 1510116 (-) True G259598
TU294751 lncRNA upstream 185672 1526025 ~ 1526401 (-) True G259619
TU294763 lncRNA upstream 189657 1530010 ~ 1530435 (-) True G259630
CI01000062_01210373_01227487.mRNA mRNA downstream 105346 1210060 ~ 1227487 (-) True CI01000062_01210373_01227487
CI01000062_01191296_01194695.mRNA mRNA downstream 138138 1190693 ~ 1194695 (-) True CI01000062_01191296_01194695
CI01000062_01131089_01166027.mRNA mRNA downstream 166226 1130865 ~ 1166607 (-) True CI01000062_01131089_01166027
CI01000062_00963254_00999381.mRNA mRNA downstream 333452 963206 ~ 999381 (-) False CI01000062_00963254_00999381
CI01000062_00953238_00953543.mRNA mRNA downstream 378818 952511 ~ 954015 (-) True CI01000062_00953238_00953543
CI01000062_01361295_01382538.mRNA mRNA upstream 20942 1361295 ~ 1382771 (-) True CI01000062_01361295_01382538
CI01000062_01401358_01417189.mRNA mRNA upstream 60052 1400405 ~ 1417189 (-) True CI01000062_01401358_01417189
CI01000062_01419375_01443524.mRNA mRNA upstream 78734 1419087 ~ 1443699 (-) True CI01000062_01419375_01443524
CI01000062_01747676_01766964.mRNA mRNA upstream 407323 1747676 ~ 1766964 (-) True CI01000062_01747676_01766964
CI01000062_01787025_01788167.mRNA mRNA upstream 446663 1787016 ~ 1788512 (-) True CI01000062_01787025_01788167
TU293258 other downstream 1317121 13737 ~ 13821 (-) True G258325
TU296692 other upstream 2605082 3945435 ~ 3957385 (-) True G261400

Expression Profile