RNA id: TU294947


Basic Information

Item Value
RNA id TU294947
length 316
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G259803
representative True

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 2046750 ~ 2047204 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTCTGACGGGCATTGTGTCGATAATCATAACCTTGAGGACTAGACTCATTTAAAGTAATGTAATCGTCCGATTTTTTATTTGTTGAACATCAATTAAATTTTTACCATTAAATGGGTTTGGAAGTTTTTTGTTTTTACTAATTCGGGGTACAGACACAGTCTCTATTTGAAAATATCTAGGTGTAAGAGTTTCTATGTGTTGAGAGTTATCTGAATTTTCTGACTTCTGTAACGTGAGGCAGCTAGCAGACGGTCGGTTTAGCCAGTTTGTCTGCTGCTTTCTGACCTGGGCCCCAGTTTGTCATGTTTCAGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294932 lncRNA downstream 73200 1973336 ~ 1973550 (-) True G259788
TU294929 lncRNA downstream 93732 1952807 ~ 1953018 (-) True G259785
TU294927 lncRNA downstream 102790 1943735 ~ 1943960 (-) True G259783
TU294926 lncRNA downstream 105793 1940681 ~ 1940957 (-) True G259782
TU294923 lncRNA downstream 128014 1918429 ~ 1918736 (-) True G259779
TU294983 lncRNA upstream 90381 2137585 ~ 2137792 (-) True G259838
TU294986 lncRNA upstream 100444 2147648 ~ 2147883 (-) True G259841
TU294987 lncRNA upstream 101362 2148566 ~ 2148796 (-) True G259842
TU294988 lncRNA upstream 101692 2148896 ~ 2149185 (-) True G259843
TU294992 lncRNA upstream 108844 2156048 ~ 2156247 (-) True G259847
CI01000062_01787025_01788167.mRNA mRNA downstream 258238 1787016 ~ 1788512 (-) True CI01000062_01787025_01788167
CI01000062_01747676_01766964.mRNA mRNA downstream 279786 1747676 ~ 1766964 (-) True CI01000062_01747676_01766964
CI01000062_01419375_01443524.mRNA mRNA downstream 603051 1419087 ~ 1443699 (-) True CI01000062_01419375_01443524
CI01000062_01401358_01417189.mRNA mRNA downstream 629561 1400405 ~ 1417189 (-) True CI01000062_01401358_01417189
CI01000062_01361295_01382538.mRNA mRNA downstream 663979 1361295 ~ 1382771 (-) True CI01000062_01361295_01382538
CI01000062_02087992_02119506.mRNA mRNA upstream 40767 2087971 ~ 2120066 (-) True CI01000062_02087992_02119506
CI01000062_02287961_02292055.mRNA mRNA upstream 240179 2287383 ~ 2292092 (-) True CI01000062_02287961_02292055
CI01000062_02400091_02406400.mRNA mRNA upstream 352550 2399754 ~ 2406400 (-) True CI01000062_02400091_02406400
CI01000062_02473721_02477346.mRNA mRNA upstream 426330 2473534 ~ 2477346 (-) True CI01000062_02473721_02477346
CI01000062_02488009_02560794.mRNA mRNA upstream 440605 2487809 ~ 2562434 (-) True CI01000062_02488009_02560794
TU293258 other downstream 2031038 13737 ~ 13821 (-) True G258325
TU296692 other upstream 1898231 3945435 ~ 3957385 (-) True G261400

Expression Profile