RNA id: TCONS_00018960


Basic Information

Item Value
RNA id TCONS_00018960
length 2075
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id XLOC_008515
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24616570 ~ 24618644 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATCCTTGTTTTGCTtgcactcacacatgcatatAGACTGAACACGTAATATACCATGAATCATGTTTACACAGGATATTTTTCACaaacctgcactgtaaaaaacatctgccctcatttttttaaagttgaatgCAATtaactttatttgtcattttaactAACATCAGTTGAATTGATATGAAAAATTCAAAACTTAAAGTATTTttgtgtaattaaaaataaatacatttgaatccGTATTAACTTAAAGTAGTTCAACCTACATAAAAACATGCTGTAATGACTTTCTGAccatatcattttttacagtgtggagacTTGAATTCGGCATATTGTCACCTTAAATTATAAGgttatatctgacatttttgtcaaaaccgagtaattcttattaaatgaccaCTTATtcaaattaagtgttttttttgttttgtttttgtataagtcgtttacattttaagactttttacttaaaaaggttttatctacaaagtcaaaCTCTAGCTTGGCCCTATAAAATTATCTTCTGTGAgataatcagcatttttaatgcacacacaAGGACCAATAAGCTTTTTTGTCATTTCGTgggaaaaaacagaaataaaaactaaattagagcgatttagaagcatttttgatATTGAGATCAAAAtattacattgttgaaaaagaaacttTTAGAATTACTTTTAGAACTTTTAgaaagaattatttttatttgtgtatataaagTCAGTGGAAcaattttcagtgtttattaaactttgttaaacaactcgtttgctcattgtctgttttcttttaaagtctttatatTTGATATTAAGCCTCGACAAGCAAatgcttaatttaattaatggggcatataattcaataaatataattctatAAATCATACAAAGcatataatgcaattaaaattaccatattaattacataaaattaacatctgcaccggaaaaaaatatatatttagcacagccttgctTAATTTCAACAAGAGAAAATATTaatcctaaaacattaaaaaaggtttacaaAGCAAACATTTTACTTTATCATACATCAGTATATTGTTATAACACcaacttttattttcattaaattaataagcaaACTGATTGTATTTGTTGAAAAAtaatgcttcaattaatgatctgtcagatagaaccttataattacaaGCGGAAAATGCCTTTTTAGAATGATAAgattctatctgcatttaccctGTTTTTTTACCCCAACTTGCAAATTTAAGCTAATTTTGATCATTTACGTTTAGAGTACaattagggtctctgtcatgttaatgtatgaaagagaactgttaaaAACAAATTGTTTGCTGTATGGAATGCTGTAtggaaaactttaaagctcaatatgtCAAAACTATTtagaacgcagagagaaccttataattccaaggtgatggtATGCCACCAGACATGTTGTTCCACTGGAACGTTATGATATCTTAATTCAAAATTATGAGgtcaattaaaaaagaaaaatgtgcaaatataaactGTTTAGGTTAAAATTatgatgaataaaaatgtattttattttgttaacagcCCCActcttaaaatatgaaaatgcatCTTTGACATAATgatggttacatttttttttaaactttcatAAAATTTGTAGGAAATTTGCATTTTCTTAAATCCAGTAAATTTGtgattttgctgtattttgtCCAgtttagcaacaaaaaaaaagtcaaaacagaACTTGATTTGTATGTATTTAGCTATATGATTAGCTTTATCAAAACAAAGAATTTCCAACACAAAAGATATTATTTGGTGCAAATGGGATTTGTTCTTTAAAGTTCATAAATCTTTGTGATTGAAAAACATgcttaatttctttttctttgttcCACAGAGCCAAAATGTCTCTATAGaaaaacatacatacactcacagacacacagaaGGATAAATCTGCAAGCCCAGAGGCAAGTCCAGTTATTACCTCTCTGCTCCATATTTAAGTCTCCCATTCTCCATTGTGTGATTTGTATGCAGCAATGACTAGCTTTATTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018959 lncRNA upstream 33145 24582174 ~ 24583425 (+) False XLOC_008514
TCONS_00017026 lncRNA upstream 47508 24563670 ~ 24569062 (+) False XLOC_008513
TCONS_00017028 lncRNA upstream 47639 24565128 ~ 24568931 (+) True XLOC_008513
TCONS_00018958 lncRNA upstream 303448 24312556 ~ 24313122 (+) True XLOC_008511
TCONS_00018776 lncRNA upstream 410589 24179932 ~ 24205981 (+) True XLOC_008508
TCONS_00018961 lncRNA downstream 58269 24676913 ~ 24689697 (+) False XLOC_008517
TCONS_00017037 lncRNA downstream 61015 24679659 ~ 24686682 (+) False XLOC_008517
TCONS_00017038 lncRNA downstream 62852 24681496 ~ 24689697 (+) True XLOC_008517
TCONS_00018962 lncRNA downstream 222647 24841291 ~ 24844913 (+) False XLOC_008522
TCONS_00018963 lncRNA downstream 223965 24842609 ~ 24844913 (+) True XLOC_008522
TCONS_00017030 mRNA upstream 15479 24572926 ~ 24601091 (+) False XLOC_008514
TCONS_00017031 mRNA upstream 18617 24588963 ~ 24597953 (+) True XLOC_008514
TCONS_00017029 mRNA upstream 29618 24572926 ~ 24586952 (+) False XLOC_008514
TCONS_00017024 mRNA upstream 47508 24563504 ~ 24569062 (+) False XLOC_008513
TCONS_00017025 mRNA upstream 47509 24563557 ~ 24569061 (+) False XLOC_008513
TCONS_00017032 mRNA downstream 25372 24644016 ~ 24671419 (+) False XLOC_008516
TCONS_00017033 mRNA downstream 25607 24644251 ~ 24670925 (+) True XLOC_008516
TCONS_00017034 mRNA downstream 58261 24676905 ~ 24690260 (+) False XLOC_008517
TCONS_00017036 mRNA downstream 58273 24676917 ~ 24683037 (+) False XLOC_008517
TCONS_00017039 mRNA downstream 72444 24691088 ~ 24736305 (+) False XLOC_008518
TCONS_00017027 other upstream 47508 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00016993 other upstream 1165884 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00016990 other upstream 1238382 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016984 other upstream 1854132 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00017035 other downstream 58269 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017050 other downstream 343492 24962136 ~ 24962252 (+) True XLOC_008523
TCONS_00017063 other downstream 851085 25469729 ~ 25469845 (+) True XLOC_008536
TCONS_00017070 other downstream 1016697 25635341 ~ 25656331 (+) True XLOC_008540
TCONS_00017071 other downstream 1048943 25667587 ~ 25667701 (+) True XLOC_008541

Expression Profile

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