RNA id: TU295379


Basic Information

Item Value
RNA id TU295379
length 216
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G260201
representative True

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 2372577 ~ 2372792 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATGACAGAATTTTTATTTTTGGGTGAGCCTTTCCTTTAATAACAACACATACAACAGTTATTTCTATTTCTCATTAATATAAACTCTAATTATACCACCGTAAATTGAAATTACCTACAATTTTGGGATCTAAAAGGCATTTCCAATTCGGTAGCAATTTATTTTACAGTCCTGTTCCCCATGTGCTTATGCTAATTACAATAACTGGGTAATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295378 lncRNA downstream 333 2371936 ~ 2372244 (-) True G260200
TU295376 lncRNA downstream 6305 2365935 ~ 2366272 (-) True G260198
TU295372 lncRNA downstream 10481 2361778 ~ 2362096 (-) True G260194
TU295366 lncRNA downstream 15826 2356503 ~ 2356751 (-) True G260188
TU295346 lncRNA downstream 16770 2355284 ~ 2355807 (-) True G260169
TU295380 lncRNA upstream 4417 2377209 ~ 2377683 (-) True G260202
TU295385 lncRNA upstream 11962 2384754 ~ 2385126 (-) True G260207
TU295387 lncRNA upstream 14454 2387246 ~ 2387578 (-) True G260209
TU295335 lncRNA upstream 34236 2407028 ~ 2410972 (-) False G260160
TU295336 lncRNA upstream 34236 2407028 ~ 2410972 (-) False G260160
CI01000062_02287961_02292055.mRNA mRNA downstream 80485 2287383 ~ 2292092 (-) True CI01000062_02287961_02292055
CI01000062_02087992_02119506.mRNA mRNA downstream 252511 2087971 ~ 2120066 (-) True CI01000062_02087992_02119506
CI01000062_01787025_01788167.mRNA mRNA downstream 584065 1787016 ~ 1788512 (-) True CI01000062_01787025_01788167
CI01000062_01747676_01766964.mRNA mRNA downstream 605613 1747676 ~ 1766964 (-) True CI01000062_01747676_01766964
CI01000062_01419375_01443524.mRNA mRNA downstream 928878 1419087 ~ 1443699 (-) True CI01000062_01419375_01443524
CI01000062_02400091_02406400.mRNA mRNA upstream 26962 2399754 ~ 2406400 (-) True CI01000062_02400091_02406400
CI01000062_02473721_02477346.mRNA mRNA upstream 100742 2473534 ~ 2477346 (-) True CI01000062_02473721_02477346
CI01000062_02488009_02560794.mRNA mRNA upstream 115017 2487809 ~ 2562434 (-) True CI01000062_02488009_02560794
CI01000062_02724898_02725662.mRNA mRNA upstream 351187 2723979 ~ 2726153 (-) True CI01000062_02724898_02725662
CI01000062_03024898_03029604.mRNA mRNA upstream 652087 3024879 ~ 3029696 (-) True CI01000062_03024898_03029604
TU293258 other downstream 2356865 13737 ~ 13821 (-) True G258325
TU296692 other upstream 1572643 3945435 ~ 3957385 (-) True G261400

Expression Profile