RNA id: TCONS_00017032


Basic Information

Item Value
RNA id TCONS_00017032
length 2159
RNA type mRNA
GC content 0.49
exon number 10
gene id XLOC_008516
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24644016 ~ 24671419 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACAGCACGGCGGGCTGAACACACACCCAGACACACTTACAGCAGGGGAAATCACACTGAAACACAAAGGTCACTGGTGTCAAGACTTCTATATGGATCTAAGACTCTAAACAATTTCAAGAggggattttttattttaaagacaaatctCAGTTTGTAAAGGAACTTACCTGGACTCAGGATGGACGCAGGCCCATTGGCGTCAGTGGCCGAAGGCTCTCCTGAAGGGGAGACAGTTTGTGCTGCTTTAGCCCGCTATGAAACCACATTGCGGGATGCTGTGCGTGAGATCCACGTAGATGTCAGTGCTTTTAAGCTAGGAATCGAGCGCAGACTAGAAGAGGCCATTCATGTGAGTGGACCTCTGGGTCGAGCTGTGGCACAGCTGCAGCAGGAAAACCGGCAGCTCAGGGGGCAGCTAGAGGCCCTGACCCGACAGGTAGAGATGCTGACGGGGTCGGTGTGTGACAGAAGTGCGCTCCTCACTGGAGGGTCACAGAGCAGCAACAGCACAGGGCATCAGTCTCCACCGTCTGCAGCACCCAGTGTGGCAGCCCTGACCGGCTCCGCCAGCGGCTCGGCCTCCAGTCCCACCACCACACGCTTCTCCAGCAGAGCCACCTTCTCTGTCACCAGCAAAACTAACAGCATTGAGCGAGATGAGCCCATTGAAGTGGATCCAGCACCAATTCCCCAAGGTTTGGAGAATGGGCACTTATCATCAACAGAAAACTCTATCGTGCCTTTGAGGAGAAACTCGCCACCCAATGGTGTGTTACACGAACACTCAGCCCCTGTTCCCATGGCAATGCCACACCTGCCTATCACAGCAACCACCAAAGTAGCTGACTCTACAGTTATGAAGAGTCCTGAGTCGCCCAGTAGCCCAATGCAAGCAACGCCTTCTGCCATTACAGACTCACTGACAAACAGTCCACCGGTCACCAGTGATAACCAGCCTCAACTAGAGTCTCCTGTTCATGCAGTATCATCTGTGAAAACATGGGCTCCGACTCCTGCCAGGACCATGGGTTCTCCACGGCTTACTGAAAAAGCATCTTCGGCTCCAGCCAAGTCAGTGACTTACTCTGGACTTTTCCCACACAATACAGATAGGAATGTGGATACGCCAGGTGATTTATCCTTCGGCAGAGGTATTGAGCGAAGACGAGAACTTGTGAGGTCCCAGACTTTACCTCGAAATATAGGAGCCCAGGCACGAAGGTCTATTTTTGAGAGGCTGGACTCTGAGAACAACAGTCGGCCCAAGCCAGTGGATTCCAAACCAAAGCTGAAACGCTCTCAGAGCTTTGGCGTATCCAGTGCTAGCAGTATCAAGCAGATTCTACTGGAATGGTGTCGATCCAAGACCATTGGGTACCAGAACATCGACATTCAGAACTTTTCCTCCAGCTGGAGTGACGGCATGGCGTTCTGTGCCCTCGTCCACTCTTTCTTCCCCACAGAGTTTGACTATAATGGTCTGACCCCTGCCGAGCGCAAACACAACTTTGAGCTGGCATTCAGCACTGCAGAGAAGAAAGCTGGCTGTGATAGGCTGATTGAAGTGGAGGACATGATGGTGATGGGCAGAAAGCCAGACCCCATGTGTGTCTTTACTTACGTCCAGTCACTATATAACCACTTGCGCAAGTTCGAGTGAGGTCTCAGCCTCTGCACTACCCTCTGCTGGACAAAACTGAACTGTAGTTACTAAAGGTTTGGGTTGGAATATGTCCCATGCCAGACAGACGCTTCTGCTGTTGCATTTTAGTCAAGAAAAGGTCATCGACTATTTATGCAGTCTTTGTGTGTGGCACGCTCTTTATAGAAATTGTGAGCCctggtttattaataaatagcaTGAAGTTAAAGGGCTGGTTCACTACAGAAGTTCTGTGATTATTTACTCATGCTCATGTTTTTTTCAGAATTGTGAGACTTTCATTTATCTGACAGGTTTCTGTCCCTTTAATGAAAACTGATTTACCCCAAATCCTGACATTTACTCTTAAGATTTTATTTACATAGATGTGGTCATGGAAGCTCAAAAATGCTTGCTCAACACAAGACAACCAATGAGGTTCATTCTTGCATGTCACGTGATGTTTGTTCTGGCCAGGGTCAgaaatttatttttctattaagGGGCAATAT

Function

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040212-1 Enables actin binding activity. Acts upstream of or within chordate embryonic development. Is expressed in several structures, including cardiovascular system; epidermis; intestinal bulb primordium; nervous system; and periderm. Orthologous to human SMTNL2 (smoothelin like 2).

Ensembl:

ensembl_id ENSDART00000043292

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018960 lncRNA upstream 25372 24616570 ~ 24618644 (+) True XLOC_008515
TCONS_00018959 lncRNA upstream 60591 24582174 ~ 24583425 (+) False XLOC_008514
TCONS_00017026 lncRNA upstream 74954 24563670 ~ 24569062 (+) False XLOC_008513
TCONS_00017028 lncRNA upstream 75085 24565128 ~ 24568931 (+) True XLOC_008513
TCONS_00018958 lncRNA upstream 330894 24312556 ~ 24313122 (+) True XLOC_008511
TCONS_00018961 lncRNA downstream 5494 24676913 ~ 24689697 (+) False XLOC_008517
TCONS_00017037 lncRNA downstream 8240 24679659 ~ 24686682 (+) False XLOC_008517
TCONS_00017038 lncRNA downstream 10077 24681496 ~ 24689697 (+) True XLOC_008517
TCONS_00018962 lncRNA downstream 169872 24841291 ~ 24844913 (+) False XLOC_008522
TCONS_00018963 lncRNA downstream 171190 24842609 ~ 24844913 (+) True XLOC_008522
TCONS_00017030 mRNA upstream 42925 24572926 ~ 24601091 (+) False XLOC_008514
TCONS_00017031 mRNA upstream 46063 24588963 ~ 24597953 (+) True XLOC_008514
TCONS_00017029 mRNA upstream 57064 24572926 ~ 24586952 (+) False XLOC_008514
TCONS_00017024 mRNA upstream 74954 24563504 ~ 24569062 (+) False XLOC_008513
TCONS_00017025 mRNA upstream 74955 24563557 ~ 24569061 (+) False XLOC_008513
TCONS_00017034 mRNA downstream 5486 24676905 ~ 24690260 (+) False XLOC_008517
TCONS_00017036 mRNA downstream 5498 24676917 ~ 24683037 (+) False XLOC_008517
TCONS_00017039 mRNA downstream 19669 24691088 ~ 24736305 (+) False XLOC_008518
TCONS_00017040 mRNA downstream 33379 24704798 ~ 24738121 (+) False XLOC_008518
TCONS_00017041 mRNA downstream 66180 24737599 ~ 24744920 (+) True XLOC_008518
TCONS_00017027 other upstream 74954 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00016993 other upstream 1193330 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00016990 other upstream 1265828 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016984 other upstream 1881578 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00017035 other downstream 5494 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017050 other downstream 290717 24962136 ~ 24962252 (+) True XLOC_008523
TCONS_00017063 other downstream 798310 25469729 ~ 25469845 (+) True XLOC_008536
TCONS_00017070 other downstream 963922 25635341 ~ 25656331 (+) True XLOC_008540
TCONS_00017071 other downstream 996168 25667587 ~ 25667701 (+) True XLOC_008541

Expression Profile

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