RNA id: TU295336



Basic Information


Item Value
RNA id TU295336
length 2596
lncRNA type antisense_over
GC content 0.37
exon number 4
gene id G260160
representative False

Chromosome Information


Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 2407028 ~ 2410972 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AACAATATTAAAAACTTTATTTTCACACAGAGGGACTTTAACAGGTGCTTTTTATATTAGGAAGGCCTAAATTTCATTTTAAAAGATGACTCTTTGAGTAGTTTGAACAATTATAGGATTGAGAACAGATGTAACAAGTAACAAGATGTTGTCAAAAATCTTTATTTACAAAATAAAATAATTAAATAAAAAAATAAAGTTACAACTTCACTGTAAAATTAAAATAGATTTTCTATAGATTTTCTTTTTAAGGTGCCTCAGTGAACTTCACTATATATTACAAGTGCCTCAAAGCTCTTCCATTATAATGGAGGAATAACAGGAGGAATCGCTGACAGTCTTTTGAGTTCTTGCAAGAATTAGAATTACACATTAGATTCCAATGTTGTGATCTGAGGAGCCTCAAACTGTGCCTCAAGTAAATTGCCAGTCCTGTATGACAAATAAAGCATCTAAGGTTCATAGTTCTAATTCAAAGTGTCTTCATGCTTTCAAAGTGCACATAATCAAACTATGAGATGATAATTCATCAACAATTTTCCTACAGGTTTACATAAAAACAATCACTTCTACTAAGAAAGTCAAGGTAAAGAAAACCACAGCACAGTAAGAGTTAAAAACATACTTTGGGTAATGCAAATACTCACGCGTGCATAAAATAATACGAACATAAAAATGAAGCACATGTCTATATAATCAATAAATCTATTTAAAAGTATTTCAGTGCAGAATCTCTTTAAAAAAAATATTAAATATGCAGACACATAGGCACCAATGTATCCAACCAGCTTATATATGGAGCTGTAACTATATTGTACAATTATTTATTGTTAAAAATGTATAAATAAAAAATCAGATTTCAATGTAAACAGAGTAAAAACAGCAATGTCGAGAAAGGTCACCACTCCAGTTTCATCTCTTCCTTGCTCCACACATACTTCCCCCCTCTCTTGAGGAACATCTTCTCATCAAAACCACTGAACTTGATGGCCTCTTCCACACCGACATCCAGAATGGACTTTGACGGATCTTTCCTCCCCTCTCGGCAATCCAAGAAGCGCATCTGCGGCATCAGATATGGAGGATTAAAAATCTATTTATGATGATTGCTCTTTCTGATGATGTAGCGTAGACAGCATGATGAGTAAATTATCAGGAAATTTTAATTCTGAAGTGAACTAATACTTTAATGGATGCTGAGGAGAAAATATGACACCACTTACATATTCATCAAGAATCAGGTAAGAGTCTCTCATCTTTTTGATTAGACTCTGGAACCAGACACTCGACGCTCTGGTGGCGGTCCAGGAAGTCTTGGAATTGCTGATCGCTAATGACAAATTTCTCTGCCTCGCGGAGGCTGTTCTCCCCTGCGTTTTCACCTTCAATTATCAGACACTGGAAGACCAGCGCACTGGGTTCAGAGCAGTGATCTGCTCTGTCATATCTTCATCCACATTGTAGGTGTTGATAACCGAGTTGATTTTGAAAGCCACCCTGTAGTCTCGGCACCAGTTGTGAATTTTATGTAGATTGTCCAAATGGCTCTTCTTGCCCTGACCTCGGCCTATGACTTTATTGGTGTCTTCATTGAAACTGTCACAAGATACTGCCAGAATGTCCAAGTAGTCACGTATTTCTGAAACCAGGTTTCTTTGATCAGACTGCCATTACTAACGATGCTGACGCTCGGCAGCTGCAGATCCTGTTTGCAGTACCGCACCAACTCTCCCAGAAAATTGCCTCTCTCGTGAATAAAGGGCTCTCCACCCGAAAAGTTGATTTTTTCCATTCCTAAAACGTACAATTGATAATATTAACAGAGTTTAAGAATAAAAAATAAGTCTATAGTCAGCATTAAAGTTAAAATAGGAAAAAATAAGTTATATTTATATTAAATGACAACAATTATAATTAAAACAAATTCAATTATAGTAATAATTATTAATGTCTGCATATCACAATCTCATGTGATCGAGTGACAGGTTGCCCCGCCCTCGTGCCAGTAATCACGTCATCAGAGAAGAGATGTCATTGCAACAAGGAGGGGAAGTTATTTTAATTAAAGATTATGGGCACATATTTTTAAATACATAAATAAATAAATAATTTGCACGGATAAATCATTTAAAGTGAATTCTGCAATATCAAAAAAAAAAAAAAAAAAAAAAAAAAATGGTGATTTCATGGTGTCTTTAGAAATGAAATTACCTGCTTCTTTCAGAAGTCGTAAGCCTCGCTTTGCCTCTTCAATAGGCAAGACGAACGAGGTCTTCGCAGTGTGGAAGCAAAATCCACATTTGTAATTGCACTGCCGGGTAAAATGGTAGTTTACACTGCTTGGAGTGGTCAGCTGCGCGCTGGGTTCCTTCTTCTGCTCTTTGGTGCGAGTCTTCGGACGACTCATCCGTCCAAGAGGTGTTGGTTGCACCAGTACGCCTGATACCCTCATCAAAATCCATCTCAACAGGGCTGAAACGAAGCTGTGGACGTTCTTGAAACACATCTGCATCAACATTCTTGCAAGACCAACTTGGTTTGATGTCACCATGGTTAAGGTGCGTAGACACTGATACTCTGAGAGCTCACGCCTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU295387 lncRNA downstream 19450 2387246 ~ 2387578 (-) True G260209
TU295385 lncRNA downstream 21902 2384754 ~ 2385126 (-) True G260207
TU295380 lncRNA downstream 29345 2377209 ~ 2377683 (-) True G260202
TU295379 lncRNA downstream 34236 2372577 ~ 2372792 (-) True G260201
TU295378 lncRNA downstream 34784 2371936 ~ 2372244 (-) True G260200
TU295344 lncRNA upstream 72127 2483099 ~ 2484159 (-) True G260167
TU295423 lncRNA upstream 151638 2562610 ~ 2562810 (-) True G260245
TU295550 lncRNA upstream 395133 2806105 ~ 2806309 (-) True G260361
TU295572 lncRNA upstream 451522 2862494 ~ 2880532 (-) True G260383
TU295578 lncRNA upstream 473803 2884775 ~ 2885036 (-) True G260389
CI01000062_02400091_02406400.mRNA mRNA downstream 628 2399754 ~ 2406400 (-) True CI01000062_02400091_02406400
CI01000062_02287961_02292055.mRNA mRNA downstream 114936 2287383 ~ 2292092 (-) True CI01000062_02287961_02292055
CI01000062_02087992_02119506.mRNA mRNA downstream 286962 2087971 ~ 2120066 (-) True CI01000062_02087992_02119506
CI01000062_01787025_01788167.mRNA mRNA downstream 618516 1787016 ~ 1788512 (-) True CI01000062_01787025_01788167
CI01000062_01747676_01766964.mRNA mRNA downstream 640064 1747676 ~ 1766964 (-) True CI01000062_01747676_01766964
CI01000062_02473721_02477346.mRNA mRNA upstream 62562 2473534 ~ 2477346 (-) True CI01000062_02473721_02477346
CI01000062_02488009_02560794.mRNA mRNA upstream 76837 2487809 ~ 2562434 (-) True CI01000062_02488009_02560794
CI01000062_02724898_02725662.mRNA mRNA upstream 313007 2723979 ~ 2726153 (-) True CI01000062_02724898_02725662
CI01000062_03024898_03029604.mRNA mRNA upstream 613907 3024879 ~ 3029696 (-) True CI01000062_03024898_03029604
CI01000062_03033192_03047656.mRNA mRNA upstream 621675 3032647 ~ 3047847 (-) True CI01000062_03033192_03047656
TU293258 other downstream 2391316 13737 ~ 13821 (-) True G258325
TU296692 other upstream 1534463 3945435 ~ 3957385 (-) True G261400

Expression Profile