RNA id: TU295578


Basic Information

Item Value
RNA id TU295578
length 262
lncRNA type intronic
GC content 0.26
exon number 1
gene id G260389
representative True

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 2884775 ~ 2885036 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTGGCCAGGGTATTCTTCAAAAATGTTTTGTTACATAAAATCAGTCAGTCAAAATGATGACTGAATATTAATTTTAGGTCTAAAATCTCTTTAACTATTTATTAAGAAAAAAAAATCATAGGATATGTTAATAATGCATCCTACGGCAAAAAAAAAAGAAAAAAAAAAGAAATGTAAATTCCCTATTATCATGTTTTTATATTCAAAAACTACTTTAAAACTAGCACTTTTAATATTACCAGAAGATAATGTACCCCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295572 lncRNA downstream 4243 2862494 ~ 2880532 (-) True G260383
TU295550 lncRNA downstream 78466 2806105 ~ 2806309 (-) True G260361
TU295423 lncRNA downstream 321965 2562610 ~ 2562810 (-) True G260245
TU295344 lncRNA downstream 400616 2483099 ~ 2484159 (-) True G260167
TU295336 lncRNA downstream 473803 2407028 ~ 2410972 (-) False G260160
TU295580 lncRNA upstream 11324 2896360 ~ 2896563 (-) True G260391
TU295607 lncRNA upstream 33415 2918451 ~ 2918683 (-) True G260418
TU296368 lncRNA upstream 117229 3002265 ~ 3002515 (-) True G261119
TU296390 lncRNA upstream 293533 3178569 ~ 3178920 (-) True G261141
TU296412 lncRNA upstream 308352 3193388 ~ 3193908 (-) True G261156
CI01000062_02724898_02725662.mRNA mRNA downstream 158622 2723979 ~ 2726153 (-) True CI01000062_02724898_02725662
CI01000062_02488009_02560794.mRNA mRNA downstream 322341 2487809 ~ 2562434 (-) True CI01000062_02488009_02560794
CI01000062_02473721_02477346.mRNA mRNA downstream 407429 2473534 ~ 2477346 (-) True CI01000062_02473721_02477346
CI01000062_02400091_02406400.mRNA mRNA downstream 478375 2399754 ~ 2406400 (-) True CI01000062_02400091_02406400
CI01000062_02287961_02292055.mRNA mRNA downstream 592683 2287383 ~ 2292092 (-) True CI01000062_02287961_02292055
CI01000062_03024898_03029604.mRNA mRNA upstream 139843 3024879 ~ 3029696 (-) True CI01000062_03024898_03029604
CI01000062_03033192_03047656.mRNA mRNA upstream 147611 3032647 ~ 3047847 (-) True CI01000062_03033192_03047656
CI01000062_03067891_03127934.mRNA mRNA upstream 182570 3067606 ~ 3127934 (-) True CI01000062_03067891_03127934
CI01000062_03211594_03253336.mRNA mRNA upstream 325545 3210581 ~ 3253627 (-) False CI01000062_03211594_03253336
CI01000062_03428921_03431581.mRNA mRNA upstream 543885 3428921 ~ 3431581 (-) True CI01000062_03428921_03431581
TU293258 other downstream 2869063 13737 ~ 13821 (-) True G258325
TU296692 other upstream 1060399 3945435 ~ 3957385 (-) True G261400

Expression Profile