RNA id: TU295580


Basic Information

Item Value
RNA id TU295580
length 204
lncRNA type intronic
GC content 0.39
exon number 1
gene id G260391
representative True

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 2896360 ~ 2896563 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATACGTCTTTCGTAGCTTTCTGGGCATCTGAAAGTGTTAATTATCTTGCTGTCAATAGAGGCCTCACTGAGCCATCGGATTTTATCAAAAATATCTTAATTTGTGTTCAGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGAAATTAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295578 lncRNA downstream 11324 2884775 ~ 2885036 (-) True G260389
TU295572 lncRNA downstream 15828 2862494 ~ 2880532 (-) True G260383
TU295550 lncRNA downstream 90051 2806105 ~ 2806309 (-) True G260361
TU295423 lncRNA downstream 333550 2562610 ~ 2562810 (-) True G260245
TU295344 lncRNA downstream 412201 2483099 ~ 2484159 (-) True G260167
TU295607 lncRNA upstream 21888 2918451 ~ 2918683 (-) True G260418
TU296368 lncRNA upstream 105702 3002265 ~ 3002515 (-) True G261119
TU296390 lncRNA upstream 282006 3178569 ~ 3178920 (-) True G261141
TU296412 lncRNA upstream 296825 3193388 ~ 3193908 (-) True G261156
TU296419 lncRNA upstream 302496 3199059 ~ 3199269 (-) True G261163
CI01000062_02724898_02725662.mRNA mRNA downstream 170207 2723979 ~ 2726153 (-) True CI01000062_02724898_02725662
CI01000062_02488009_02560794.mRNA mRNA downstream 333926 2487809 ~ 2562434 (-) True CI01000062_02488009_02560794
CI01000062_02473721_02477346.mRNA mRNA downstream 419014 2473534 ~ 2477346 (-) True CI01000062_02473721_02477346
CI01000062_02400091_02406400.mRNA mRNA downstream 489960 2399754 ~ 2406400 (-) True CI01000062_02400091_02406400
CI01000062_02287961_02292055.mRNA mRNA downstream 604268 2287383 ~ 2292092 (-) True CI01000062_02287961_02292055
CI01000062_03024898_03029604.mRNA mRNA upstream 128316 3024879 ~ 3029696 (-) True CI01000062_03024898_03029604
CI01000062_03033192_03047656.mRNA mRNA upstream 136084 3032647 ~ 3047847 (-) True CI01000062_03033192_03047656
CI01000062_03067891_03127934.mRNA mRNA upstream 171043 3067606 ~ 3127934 (-) True CI01000062_03067891_03127934
CI01000062_03211594_03253336.mRNA mRNA upstream 314018 3210581 ~ 3253627 (-) False CI01000062_03211594_03253336
CI01000062_03428921_03431581.mRNA mRNA upstream 532358 3428921 ~ 3431581 (-) True CI01000062_03428921_03431581
TU293258 other downstream 2880648 13737 ~ 13821 (-) True G258325
TU296692 other upstream 1048872 3945435 ~ 3957385 (-) True G261400

Expression Profile