RNA id: TU296412



Basic Information


Item Value
RNA id TU296412
length 521
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G261156
representative True

Chromosome Information


Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3193388 ~ 3193908 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GATCGGTTCACGAACCGCTTGAGCTGAGGCGCTACAGCGATCCGTCATGACACATTAAAGAGCCACAAAACGGTTTTTATCCTCTTGTTAAGTCGTAGCGTAAGGAACGCCGTTTCTGGGTCCAAGCCTCGACTCGTTTCACTTGAGAATGCCATCTCGACGGCCTTTTATGAGCGCTATTTATTCATATTAAACATTTAACATTTTAAAAAGTTCAACATTTCAAATACTTACAGTCTACACAACAGTCTCCGTGCTCACAGCATCACAGACATTAATATTTTAACGATTTATAAGATGAATCACTGTCTGGCCATCTGGGATTTTGGTATGGAGATAAAGGTTATAATTATAATTTTTTGGTAGTATTACACCACATCATGTGTGTATATTAGCACCGTTTGTTGTTTTCTTGTAGTATGAGATAGAGCGTTTGAACCCGGAAGCACTGCCACGTGACGTCAGACTTAACAACCGAATTGTTCGAATTTCTTTAAAAAATACACAATTTCAAAGCTGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU296390 lncRNA downstream 14468 3178569 ~ 3178920 (-) True G261141
TU296368 lncRNA downstream 190873 3002265 ~ 3002515 (-) True G261119
TU295607 lncRNA downstream 274705 2918451 ~ 2918683 (-) True G260418
TU295580 lncRNA downstream 296825 2896360 ~ 2896563 (-) True G260391
TU295578 lncRNA downstream 308352 2884775 ~ 2885036 (-) True G260389
TU296419 lncRNA upstream 5151 3199059 ~ 3199269 (-) True G261163
TU296405 lncRNA upstream 15606 3209514 ~ 3210281 (-) True G261149
TU296402 lncRNA upstream 58895 3252803 ~ 3306198 (-) True G261148
TU296429 lncRNA upstream 134782 3328690 ~ 3329030 (-) True G261173
TU296430 lncRNA upstream 135292 3329200 ~ 3330273 (-) True G261174
CI01000062_03067891_03127934.mRNA mRNA downstream 65454 3067606 ~ 3127934 (-) True CI01000062_03067891_03127934
CI01000062_03033192_03047656.mRNA mRNA downstream 145541 3032647 ~ 3047847 (-) True CI01000062_03033192_03047656
CI01000062_03024898_03029604.mRNA mRNA downstream 163692 3024879 ~ 3029696 (-) True CI01000062_03024898_03029604
CI01000062_02724898_02725662.mRNA mRNA downstream 467235 2723979 ~ 2726153 (-) True CI01000062_02724898_02725662
CI01000062_02488009_02560794.mRNA mRNA downstream 630954 2487809 ~ 2562434 (-) True CI01000062_02488009_02560794
CI01000062_03211594_03253336.mRNA mRNA upstream 16673 3210581 ~ 3253627 (-) False CI01000062_03211594_03253336
CI01000062_03428921_03431581.mRNA mRNA upstream 235013 3428921 ~ 3431581 (-) True CI01000062_03428921_03431581
CI01000062_03436291_03454196.mRNA mRNA upstream 241529 3435437 ~ 3454558 (-) True CI01000062_03436291_03454196
CI01000062_03470252_03479300.mRNA mRNA upstream 276193 3470101 ~ 3479300 (-) False CI01000062_03470252_03479300
CI01000062_03500344_03507001.mRNA mRNA upstream 306019 3499927 ~ 3507331 (-) True CI01000062_03500344_03507001
TU293258 other downstream 3177676 13737 ~ 13821 (-) True G258325
TU296692 other upstream 751527 3945435 ~ 3957385 (-) True G261400

Expression Profile