RNA id: TU296692


Basic Information

Item Value
RNA id TU296692
length 457
RNA type TUCP
GC content 0.49
exon number 2
gene id G261400
representative True

Chromosome Information

Item Value
chromosome id CI01000062
NCBI id null
chromosome length 4496499
location 3945435 ~ 3957385 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTCCTCCAGCTCAGAGGTGTTGACACAGGTATGACTAGAGAGAAAGTTAATTTTCTCCTGCACGATGAGGTACTTCTGCGAGCTCTCCTGGGGCTGTTCCAGAGCTTTGAACACCGTGGCTCCGATGATCAGGTACAGAACCACCAGCAGGAAGATCGCCAATACTGTTTTCCACTTCATTACGGTGGTTATGGTATCACAATCATCACCCGAGTTATACACAATGGGCTTGGAGGAGAACGACAGCCGTGGTTTGGTGTTGTGTGTGGCTGATTTAGGATCTAAAAGATCAGGTGCAGCCACTGGAGGGAACAAAGGGAGAGAGAAGCTCCACTGGGGAATTCTGAAGTCGGAGGTAAGGATGAGAATAAGCACGATGTCACCTCTGGGATTGGAAAGAATGAGGAGTCAGCATGTGCTGTTTGACTGTAAGTCCCAAGCACAGCCAAGGATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296684 lncRNA downstream 21429 3922014 ~ 3924006 (-) True G261397
TU296518 lncRNA downstream 62898 3879044 ~ 3882537 (-) False G261249
TU296517 lncRNA downstream 62898 3880964 ~ 3882537 (-) True G261249
TU296520 lncRNA downstream 93382 3846434 ~ 3852053 (-) True G261251
TU296522 lncRNA downstream 106373 3838281 ~ 3839062 (-) True CI01000062_03837446_03838592
TU296703 lncRNA upstream 42036 3999421 ~ 4000121 (-) False G261411
TU296704 lncRNA upstream 42036 3999421 ~ 4000653 (-) True G261411
TU296710 lncRNA upstream 58343 4015728 ~ 4015943 (-) True G261417
TU296712 lncRNA upstream 59738 4017123 ~ 4017369 (-) True G261419
TU296662 lncRNA upstream 129957 4087342 ~ 4088434 (-) True G261380
CI01000062_03837446_03838592.mRNA mRNA downstream 106660 3837162 ~ 3838775 (-) False CI01000062_03837446_03838592
CI01000062_03788892_03789185.mRNA mRNA downstream 155819 3788452 ~ 3789616 (-) True CI01000062_03788892_03789185
CI01000062_03619844_03628631.mRNA mRNA downstream 316804 3619002 ~ 3628631 (-) True CI01000062_03619844_03628631
CI01000062_03601436_03604051.mRNA mRNA downstream 341092 3601294 ~ 3604343 (-) True CI01000062_03601436_03604051
CI01000062_03556433_03560289.mRNA mRNA downstream 384422 3556203 ~ 3561013 (-) True CI01000062_03556433_03560289
CI01000062_04005001_04005527.mRNA mRNA upstream 47226 4004611 ~ 4005527 (-) True CI01000062_04005001_04005527
CI01000062_04005972_04008217.mRNA mRNA upstream 48531 4005916 ~ 4008380 (-) True CI01000062_04005972_04008217
CI01000062_04021845_04022218.mRNA mRNA upstream 64092 4021477 ~ 4022218 (-) True CI01000062_04021845_04022218
CI01000062_04054548_04067692.mRNA mRNA upstream 97082 4054467 ~ 4067970 (-) True CI01000062_04054548_04067692
CI01000062_04070271_04080873.mRNA mRNA upstream 112886 4070271 ~ 4080973 (-) True CI01000062_04070271_04080873
TU293258 other downstream 3929723 13737 ~ 13821 (-) True G258325

Expression Profile