RNA id: TCONS_00017045


Basic Information

Item Value
RNA id TCONS_00017045
length 4053
RNA type mRNA
GC content 0.49
exon number 21
gene id XLOC_008520
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24756860 ~ 24794610 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCGGGACAGAGGGCAAGAGACCTGTGTTCAGCGAATAAATGCCCGCTGCTGCTTTTATCTCTGCTCGTTGTTTATATCAGCTCCATCAACTCAGTTTCCGCAGGCGAGCTGAAGACAGAGACTTACAACAAATACTACAATTACGACGAACTTACCGAGCTTCTCAAAAGTCTCGCCGTTAAACACCCCAGCATCGCCAATCTGACCAGCATCGGCAGGTCCGTTGAAGGCAGAGAGCTGTGGGTGATGAGAGTCACCAAAGACATCAGTGCTGCTGATGGAACAGGAAAACCCAAATTCAAGTATGTGGGCAACATGCACGGAGACGAGACCGTGTCCCGACAGGTGTTGGTTTACCTGCTGGAGGACCTACTGGAGAAGTACGGGGAGGATCAGCGGGTCACGGAGCTCGTCAACACCACCGATATTTACATCCTGCCGAGTATGAATCCTGACGGCTTTGAAAGGTCCGTGGAGGGGGATTGTTTGGGCAAAGATGAGGGTCGGCATAATGCTAAAAACATCGACCTGAATAGAAGTTTCCCAGATCAGTTTGAGGAAATACACTTGAATGCAGAAGACATCCCTGAAGTTACTGCTGTCATAAAGTGGATCCTGGAGAACAAATTTGTTCTCTCTGGTAATCTGCACGGCGGGACGGTAGTGGCCAGTTATCCCTATGATGACTCTGCAGGTCATTCTACTGATGGCACCTATAGCAGATCTCCCGATGATGCCCTCTTCAGGCACTTGGCCCTTGTTTACGCAGAGAATAACCCGGTTATGAAAACCGGGCAGCCAAAGTGTGAGGACAACGTGAACGAATCCTTCCCGGATGGCATCACAAATGGAGCAAAGTGGTATGACGTACCAGGGGGTATGCAGGATTTCAATTACCTGAAGGGGAACTGTTTGGAAATCACCATGGAACTCAGCTGCTGCAAATACCCACCCTCATCCCAACTCAAGACCGAATGGGAAAACAATCGTGACGCCCTACTGGCCTACATGGAGCAGATTCATATTGGAGTGCGTGGCTTTGTAAGGGCCGCCAAAAATGAAGCTCCTATCGCTGATGCTGTGATTATGGTTGCGGACATTAAACACAATGTGAGCACCTCACGTTTTGGAGACTACTATCGTCTGTTGCTGCCTGGCACCTACAGCATCACCGCGGTAGCACCGGGCTACATCCCTATGACTGTAGCTGGGGTGGAGGTAAAAGAGGGAAAAGCAACTGTGCTGAATATCACCCTGTTGTCGGAGAATGACGAGAGATCCACAGCCACCCCAAACCCAGAATCCTCCACTGACACCTCTGCCAGCAGCTCTAACAGTGGCAGCACAGACAACAACAGCAACTCTGGTGCCAGCGACAAAGCAGCAGATCTCACAATACAGCCTCAGGAGTTCCGGCATCACCGGTACATTGACATGGAGCTGTTCATGAAGAAATTCAGCTCTGAGTACAGCTCCATCACACGCCTCTATTCCATTGGGAAGTCTGTGCAGAAACGTCTCTTGTGGGTCATGGAGATCTCCAACAATCCTGGTGTCCACGAGTTAGGTGAACCGGAGTTTAAGTATATCGGTAACATGCATGGCAATGAAGTGGTTGGTCGTGAATTGCTCCTCAACCTCATTGAGTACCTGTGTCGCAACTATGGCACTGACCCTGAGGTCACCCAGCTTGTCGACACCACACGGATCCACATCATGCCTTCAATGAACCCGGATGGTTATGAAGTGTCCCAAAAGGGAGATGTCGAAGGCATAAAGGGCCGTAACAACAGTAAGAACTACGACCTGAACCGTAACTTTCCTGACCGGTTCAAACTGATCACCGATCCCATCCAGCCAGAGACCCTGGCTGTGATGAACTGGTCAAAGAACTACTCATTTGTGTTGTCTGCCAACCTTCATGGAGGCTCTCTGGTGGTGAATTATCCATTTGACGATAATCTTGAGGACGTTATCGGATACAGCAAGTCCCCAGATGATGCTGTATTCAGGATGGTGGCTCTCGCTTACTCTCAGGAAAACTCTGAAATGCATGAAGGTCACCCCTGTAAGGAAATGAGTTCATACCCGGAATATTTTCAAGATGGCATCACCAATGGCGCAGCATGGTACAATGTCCACGGAGGAATGCAGGACTGGAACTACATGAACACAAACTGCTTTGAGGTGACTATTGAACTGGGCTGTCACAAATATCCGCCAGTTGCGGATCTGCAGAAATACTGGGAACAAAACCGCAAATCACTTCTGCAGTTCATCCATCAGGTCCACCGTGGAGTAAAAGGAATGGTAATCGACAGCAAAGATGGATCTGGCATTCCCAATGCTACCATCACTGTGGAAACCATCCATCATCAAGTCACATCCAGTTCTTTAGGGGACTACTGGCGCTTACTCGTTCCAGGAAAATACAAGCTGACTGCCTCTGCCCAAGGCTACATGTCAGATAGTTCTTCTGTCACCGTGCCTAAGGACGGATTGGAGATTGTTAATTTCACACTGACCCGGATTCCCACACATGCAAACGGACAGGAGACAGAAAACACAACCCCAGTTTTGGACCCCAGTGTAAGGGAGTTTCAGGCCCTCATCAAGCAGCTGTCAACCCAATCCGGTTTGGACAAACTGATCCAGGACACTCCTACCGAGAGTAGCTTCCGGTACCAGCAGTACGGCGAGGTTTCCGAGTTCCTGCGTGGACTGACACTTAACTTTCCAGAGATTACTTCTCTCCGCAGTCTTGGTCAGAGTGTGGAGATCAGGAATATCTGGGCTCTGGAGATCTCCAACAATCCTAAAGTCCAAGAACCGTCAAAGCCCAAGATCCGATTTGTAGCAGGAATCCATGGAAACGCACCAGTGGGCACAGAGCTGCTTCTGGAGTTTGCTGAAAGTCTCTGTGTAAACTACGGCAAGAATGCAGCCATCAACAGGCTCATAAATGAGACAAGAATTGTTATCCTGCCAAGCATCAACCCAGATGGACGTGAGCTGGCGAAGGAAAGAGACTGCACCTCCACTGTTGGCATGACCAATGTGCATGGCAAAGACCTTGACACTGACTTCATTGtaggtaATGCATCTCAGCGAGTTTCAGAACCTCAGCCAGAGACACGCGCTGTGATGAATCTGATTCAGGAAAGAGGCTTCACTCTCTCTGTGGCTCTGGATGGAGGCTCATTGTTGGTCACTTATCCATATGACAAACCAGTGCAAACCGTTGAAAATGATGACACACTGAGATATCTGGCCACTGTGTATGCTGATCACCATCCCACAATGCACTTGGGTAACACTGGATGTCCAAACAGCGTCCAAAGTAACATCCCTGGTGGCGTCCTTCGAGCAGCAGTGTGGCACAGTCACATGGGCAGCATGAAGGACTTCAGTGTGGACTTTGGTCACTGTCCCGAGATCACAGTCTACACCAGCTGCTGTCTGTTTCCTTCAGCTGAAATGCTGCCCTCGCTCTGGGCTGAGAACAGGAAGTCTCTTCTGAGCATGCTGGTTGAGGTGCACAAAGGGGTTCGTGGAATAGTCAAGGATAAGAACGGTAAGCCCATCGTGGGTGCTGCAATTGTGTTGAACGGTGGTGTTCGAGTCTACACTAGTGAAGGAGGGTATTTCCATGCTCTTCTGGCTCCTGGTTTACACAGCATTGAAGCGGTGGCTGATGGATACCAACAGCAATCACAGAagGTGTCTGTGTCGCAATTTGAAGCAGCAAGTTCCATTATCATTGAGTTTGACATGGAGAACGATATATTTGGCCTTCCCAGAGAATTAGTAGTGGCGAGTGCAGCTGCCGCAATGACGGCACTAGTCTTGACCGCCTGTATCATCTGGTGCGTCTGCTCGGCCAAATCCAACAGACATAAAGATGGCTTCCATCGACTACGGCAGCATCGAGATGATTATGACGACGAGGTCCGCCTCATGTCTATGGGCTCCAAAAAGTCTCTCCTCAGTCATGAGTTTCAAGATGAGAGCGAAAGTGATGAGGATACACTGTACACCAACAAACTCTGA

Function

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0006508 proteolysis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0004185 serine-type carboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko02025 Biofilm formation - Pseudomonas aeruginosa

ZFIN:

id description
ZDB-GENE-081112-2 Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in peptide metabolic process and protein processing. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human CPD (carboxypeptidase D).

Ensembl:

ensembl_id ENSDART00000078035

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018961 lncRNA upstream 67300 24676913 ~ 24689697 (+) False XLOC_008517
TCONS_00017038 lncRNA upstream 67300 24681496 ~ 24689697 (+) True XLOC_008517
TCONS_00017037 lncRNA upstream 70315 24679659 ~ 24686682 (+) False XLOC_008517
TCONS_00018960 lncRNA upstream 138353 24616570 ~ 24618644 (+) True XLOC_008515
TCONS_00018959 lncRNA upstream 173572 24582174 ~ 24583425 (+) False XLOC_008514
TCONS_00018962 lncRNA downstream 49866 24841291 ~ 24844913 (+) False XLOC_008522
TCONS_00018963 lncRNA downstream 51184 24842609 ~ 24844913 (+) True XLOC_008522
TCONS_00018964 lncRNA downstream 216130 25007555 ~ 25053314 (+) False XLOC_008524
TCONS_00017051 lncRNA downstream 229660 25021085 ~ 25027250 (+) False XLOC_008524
TCONS_00018965 lncRNA downstream 229679 25021104 ~ 25053314 (+) False XLOC_008524
TCONS_00017042 mRNA upstream 2102 24746444 ~ 24754895 (+) False XLOC_008519
TCONS_00017043 mRNA upstream 2783 24749985 ~ 24754214 (+) True XLOC_008519
TCONS_00017041 mRNA upstream 12077 24737599 ~ 24744920 (+) True XLOC_008518
TCONS_00017040 mRNA upstream 18876 24704798 ~ 24738121 (+) False XLOC_008518
TCONS_00017039 mRNA upstream 20692 24691088 ~ 24736305 (+) False XLOC_008518
TCONS_00017046 mRNA downstream 4048 24795473 ~ 24837244 (+) False XLOC_008521
TCONS_00017047 mRNA downstream 4060 24795485 ~ 24837240 (+) False XLOC_008521
TCONS_00017048 mRNA downstream 4111 24795536 ~ 24837655 (+) False XLOC_008521
TCONS_00017049 mRNA downstream 4121 24795546 ~ 24837377 (+) True XLOC_008521
TCONS_00017052 mRNA downstream 233260 25024685 ~ 25025816 (+) True XLOC_008524
TCONS_00017035 other upstream 73707 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017027 other upstream 187935 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00016993 other upstream 1306311 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00016990 other upstream 1378809 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016986 other upstream 2023964 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00017050 other downstream 170711 24962136 ~ 24962252 (+) True XLOC_008523
TCONS_00017063 other downstream 678304 25469729 ~ 25469845 (+) True XLOC_008536
TCONS_00017070 other downstream 843916 25635341 ~ 25656331 (+) True XLOC_008540
TCONS_00017071 other downstream 876162 25667587 ~ 25667701 (+) True XLOC_008541
TCONS_00017074 other downstream 1106021 25897446 ~ 25897539 (+) False XLOC_008543

Expression Profile

//