RNA id: CI01000063_01669384_01670016.mRNA


Basic Information

Item Value
RNA id CI01000063_01669384_01670016.mRNA
length 2502
RNA type mRNA
GC content 0.37
exon number 3
gene id CI01000063_01669384_01670016
representative False

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1669317 ~ 1672019 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTATCAATTCAAACACTATTTGAGAGCCAATAAATGAAATAAATGATTTATAAATCAATTCAGAATAAGAAAATCAGAATAATCAAAAACTGTGCTTCAGTTCCCTGCACAATATGTGCCTTATAAGAAAACAAATGTTCATGTTTATTAATAATAATATTAATAATTTTTCAGATCTTAAAAATAATACCGTTTTCTCGATTGCTAACACGCTATAACTGAGTTGGCACAATTCCCCAAACTATATTCATTCAGTTCTCAAAACAAAGACACATTTCTCAAAACGTTTAAAACATTTTTCACACACATTCCAATTTTCTTAATAGTTTCTGCAAAACTCTAACTAAAAACGCCCTCATTTTACACAGGTTTAACCATGTTATCATTCATAAAACAATCAAAGCACTCACCGGGCTCTCCCAGCTAACTGGGTGCTGAGACCTCTATTGACACTGACGAAGGCAGACATCTCCTGCTTAAACTTAATACAACTATTTTTAGAATGCAGACCTTTTTGAATTTTTATCATTCATAAAACACACAATATAATTAACTCAAGCATCGCATTTTCCTCAAATAGCACACATTTATCAATGAGTAGCAAAACTGATGACACACCAATCAGAATCTCAGAAAAAAGGGCCAGAGGTGATTGTGCTTTAGAAAATACATCCTAACACTGCAGAGCCGAAAGAACCATCTACACGGTTTTTATATTAGGCTACTTACACATACAATATAATTACAGTACACAGTAACAGTACTTTAGATGAGGGAAATGTCTCTATTCTATGTACAGTAAACTGTAGCACATGTTGTACACCCTCAAATTCGCGATTTTCAAATACATTTCGCAGAACTGAGAAATGACTTGCTAAGGGAGGTAGAGAAAGTCTTTTGTCAGAAGACCAAGACACTGCTATAGTAGCACTGTATACTGTAATGTAATCTGGCCAAAGGTGCAGAAGATGCTGAATTTATTTATTTACTGTACAGTAATTGACAGTATAGGCCTACTGTATTGTGTTGAATACCGCATTCATATTCAATTATTTGGTATTTGATTTGGTATTTGAAGTTTTCTTTTCTAGTGCTTTTCATCTACTTTAAAATCACTTTACAGTAATGTAGTGAAAACTCATTGATGAATTTTGCTGTATCTTCACATTGTTTCATTTAGCTACTGCAATAGACATTGATTGCTCTTACTAGCCTATTAACGCAGAAATGTTGTATAGGCTATTTGTTCGGTTTTGTGTGTCATCTGAGGCCATATTTGATTTTGACAAAAGATAATATGTTTTTGACTAAATTATTTGATTTTGAGGTGACAGTTTGAGGTTTGTGCAGGTTGGTAGTTCAGGGATTGTGTTTATAGTTGTGAGAAAATGGCGAATTGTTTCATGAATATTGTGTTAGAAATCGAGAGAAACTGTAATAAACATCGTATTAAAAGTAAAATCAGTGGCGTATATGAGGCCATAATGTACCAAATAAATTAGTACTCAAAATAAACTGCATTGGGCTGTTTATTTAAAAAAATAAAAAAATAAAAAAATAAATAAATCTGTTAAATTAAAAGGGTGTAGCTAACATAACATATATTAGGGGTAGGAAGCATAACGAGTCATATCTCACATACTAAAAACTAAACTAACTTACTAAATAAATAAAATAGGCTAATTATTTAAATTAGGTTGTGGGGTTACTTGTATCGAAGATGCGGACGTGAGGTGATTAGGATCTGACCCTTTTCTGTTTATGGCTGACTCAAGTGCTCACGCATGTACATTATCATCACGTATCACCCCTAAAATGAGGAGGGGAAAATGGGCATCATTTCAATTTTCAGTGCTCACTGGCAGGAGTTCAATCTGACACGCAATTAGGCTGTATCTTGGGTGTGCCCACTCAACTACAAACGTTTAAAAAGAGGACCAACGTTTAGGTGGGTAAGTCATTTGACCATAGCACGTCTATTCATTCCAGACATCGATTCAAAATGAGTCTCTCTGCTAAGGACAAAGCCACTGTGAAGGCCCTCTGGGCAAAGATCTCCCCAAAGGCTGAGGACATCGGTAATGAGGCGTTGTCCAGAATGCTTTTGGTCTACCCTCAGACCAAGACCTACTTCTCTCACTGGAGCGACCTGACCCCCGGCTCTGCTCCTGTGAGGAAGCATGGAAAGAAGGTCATCGGTGGACTCGGTTTGGCTATTGAAAAGATCGACGACCTTTTCGGCGGTCTGCTCACTCTTAGCGAGCTGCATGCCTTTCAGCTGAGAGTCGATCCTGCTAACTTCAAGATCCTGTCCCACAACATTCTTGTGGTGTTGTCCATGCTCTTCCCTGATGACTTCACACCTGAAGCCCACCTGGCCATGGACAAGTTCCTTGCAGGAGTGGCCCTGGCTTTGTCTGACAAATATCGTTAACCTGTTTGATATTTGTTAAGCAGTTTGAATGTTGTTTTGTCGATTTGGTCAACAACATGTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298853 lncRNA downstream 1473 1666949 ~ 1667844 (-) True G263279
TU298852 lncRNA downstream 3518 1665530 ~ 1665799 (-) True G263278
TU298851 lncRNA downstream 4239 1664634 ~ 1665078 (-) True G263277
TU298847 lncRNA downstream 9347 1659557 ~ 1659970 (-) False G263275
TU298848 lncRNA downstream 9347 1659557 ~ 1659970 (-) True G263275
TU298857 lncRNA upstream 15280 1687299 ~ 1687525 (-) True G263283
TU298860 lncRNA upstream 18739 1690758 ~ 1691170 (-) True G263286
TU298861 lncRNA upstream 19748 1691767 ~ 1692177 (-) False G263287
TU298864 lncRNA upstream 19748 1691767 ~ 1692242 (-) True G263287
TU298858 lncRNA upstream 23535 1695554 ~ 1695729 (-) True G263284
CI01000063_01603848_01622589.mRNA mRNA downstream 46531 1603474 ~ 1622786 (-) True CI01000063_01603848_01622589
CI01000063_01557732_01560541.mRNA mRNA downstream 108776 1557653 ~ 1560541 (-) True CI01000063_01557732_01560541
CI01000063_01554604_01555607.mRNA mRNA downstream 113710 1553980 ~ 1555607 (-) True CI01000063_01554604_01555607
CI01000063_01548731_01553329.mRNA mRNA downstream 115988 1548447 ~ 1553329 (-) True CI01000063_01548731_01553329
CI01000063_01541176_01541412.mRNA mRNA downstream 126746 1541086 ~ 1542571 (-) True CI01000063_01541176_01541412
CI01000063_01682341_01683245.mRNA mRNA upstream 10260 1682279 ~ 1683245 (-) True CI01000063_01682341_01683245
CI01000063_01802070_01805063.mRNA mRNA upstream 129683 1801702 ~ 1805475 (-) True CI01000063_01802070_01805063
CI01000063_01809470_01817028.mRNA mRNA upstream 137376 1809395 ~ 1817028 (-) True CI01000063_01809470_01817028
CI01000063_01856270_01877031.mRNA mRNA upstream 184226 1856245 ~ 1877095 (-) True CI01000063_01856270_01877031
CI01000063_01890725_01899483.mRNA mRNA upstream 218373 1890392 ~ 1899546 (-) True CI01000063_01890725_01899483
TU298810 other upstream 504420 2176439 ~ 2177485 (-) True G263239
TU298801 other upstream 653093 2325112 ~ 2327719 (-) True G263230
TU298806 other upstream 1053740 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU301418 other upstream 3490475 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 3516384 5190050 ~ 5190617 (-) True G265565

Expression Profile